View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10499_low_10 (Length: 333)
Name: NF10499_low_10
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 9933177 - 9932874
Alignment:
| Q |
20 |
caaacaatgtgttacatttttctttacaatttttatctctcactagttatcatagaaagctttaaagggagaaataaatggcagattgggctccaattgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9933177 |
caaacaatgtgttacatttttctttataatttttatctctcactagttatcatagaaagcttcaaagggagaaataaatggcagattgggctccaattgt |
9933078 |
T |
|
| Q |
120 |
tataggcttgatcttgtttgtgttattttcacctggattactatttcagctacctggcaaaggcagggtggtggaatttgtcaatttccaaacaagtgcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9933077 |
tataggcttgatcttgtttgtgttattttcacctggattactatttcagctacctggcaaaggcagggtggtggaatttgttaatttccaaacaagtgcc |
9932978 |
T |
|
| Q |
220 |
atttccatttttgttcattctcttctcttctttggctttatggttatctttcttgttgccattaatgttcatatcaatagtggttaagtgatcatccacc |
319 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9932977 |
atttccatttttgttcattcccttctcttctttggctttatggttatctttcttgttgccattaatgttcatatcaatagtggttaagtgatcatccacc |
9932878 |
T |
|
| Q |
320 |
tatg |
323 |
Q |
| |
|
|||| |
|
|
| T |
9932877 |
tatg |
9932874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 9938142 - 9937847
Alignment:
| Q |
20 |
caaacaatgtgttacatttttctttacaatttttatctctcact---agttatcatagaaagctttaaagggagaaataaatggcagattgggctccaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9938142 |
caaacaatgtgttacatttttctttaccatttttatctctcactgctagttaacatagaacgctccaataggagaaataaatggcagattgggctccaat |
9938043 |
T |
|
| Q |
117 |
tgttataggcttgatcttgtttgtgttattttcacctggattactatttcagctacctggcaaaggcagggtggtggaatttgtcaatttccaaacaagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938042 |
tgttataggcttgatcttgtttgtgttattttcacctggattactatttcagctaccaggcaaaggcagggtggtggaatttgtcaatttccaaacaagt |
9937943 |
T |
|
| Q |
217 |
gccatttccatttttgttcattctcttctcttctttggctttatggttatctttcttgttgccattaatgttcatatcaatagtggttaagtgatc |
312 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
9937942 |
gctatttccatttttgttcattcccttctcttctttggatttatggttatctttattgttgccattgatgttcatatctacagtggttaagtgatc |
9937847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University