View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_11 (Length: 330)
Name: NF10499_low_11
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40457721 - 40457489
Alignment:
| Q |
1 |
tgatgaagatggtcgtgagagtgtaggcgatgatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcaccatgg |
100 |
Q |
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| T |
40457721 |
tgatgaagatggtcgtgagagtgtagacgatgatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatgg |
40457622 |
T |
|
| Q |
101 |
ttcataatctttgagttatcactgatgagttgtttcttctttctttccatgaaatttgttgatggtaagagtgagggtagggtatcaagaaagtcaaaga |
200 |
Q |
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| T |
40457621 |
ttcatcatctttgagttatcactgatgagttgtttcttctttctttccatggaatttgttgatggtaagagtgagggtagggtatcaagaaagtcaaaga |
40457522 |
T |
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| Q |
201 |
agagtttgtatgctgtgaatgaataattgggat |
233 |
Q |
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| T |
40457521 |
agagtttgtatgctgtgaatgaataattgggat |
40457489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 40285480 - 40285681
Alignment:
| Q |
32 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagtt |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
40285480 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagtt |
40285579 |
T |
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| Q |
132 |
gtttcttctttctttccatgaaatttgttgatggtaagagtgagggtagggtatcaagaaagtcaaagaagagtttgtatgctgtgaatgaataattggg |
231 |
Q |
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| T |
40285580 |
gtttcttctttctttccatggaatttgttgatggtaagagtgagggtagggtatcaagaaagtcaaagaagagtttgtatgctgtgaatgaataattggg |
40285679 |
T |
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| Q |
232 |
at |
233 |
Q |
| |
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|| |
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| T |
40285680 |
at |
40285681 |
T |
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Back To:
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