View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_12 (Length: 325)
Name: NF10499_low_12
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_12 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 16590715 - 16590405
Alignment:
| Q |
2 |
gaggagaagcataggagagagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggag |
101 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16590715 |
gaggaggagcatatgagagagccattgttggagaagaagcaatactatgaagattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggag |
16590616 |
T |
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| Q |
102 |
tatccataataaagcttttgattatatggatggtggttttatcagctagtaatcattattcaacttcttgttattannnnnnncacttgtagaataattg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||| |
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| T |
16590615 |
tatccataataaagcttttgattatatggatggtggttttatcagcaagtaagcattattcaacttcttcttattatttttttcacttgtagaataattg |
16590516 |
T |
|
| Q |
202 |
ttctttgatactttttgtttatatgtgattcttgtgagtacacactacacaattttgttgatgctactgttctaagttcttagtacggtttgaaaatctt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16590515 |
ttctttgatactttttgtttatatgtgattcttgtgagtacacactacacagttttgttgatgctactattctaagttcttagtacggtttgaaaatctt |
16590416 |
T |
|
| Q |
302 |
gttttcttaat |
312 |
Q |
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||||||||||| |
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| T |
16590415 |
gttttcttaat |
16590405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 16530723 - 16530572
Alignment:
| Q |
19 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| || ||||||||| |||| ||||||| ||||| ||| |
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| T |
16530723 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggctatccatgataaatctt |
16530624 |
T |
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| Q |
119 |
ttgattatatggatggtggttttatcagctagtaatcattattcaacttctt |
170 |
Q |
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| T |
16530623 |
gtgattatttggatgattgttttatctgctagtaagcattattcaacttctt |
16530572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 16522479 - 16522360
Alignment:
| Q |
16 |
gagagagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| | || |||||||| | ||| |
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| T |
16522479 |
gagagagccattgttggagaagaagcaatactataaggattgtcctggttgtaaggttgaacaagccaaagagcttaacaagggggtatccattacaaat |
16522380 |
T |
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| Q |
116 |
cttttgattatatggatggt |
135 |
Q |
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|||||| | ||||||||||| |
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| T |
16522379 |
cttttggtcatatggatggt |
16522360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 1441 - 1302
Alignment:
| Q |
19 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctt |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||| || ||||||||| |||| ||||||||||||| ||| |
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| T |
1441 |
agagccattgttggagaagaagcaatactatgaagattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggctatccataataaatctt |
1342 |
T |
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| Q |
119 |
ttgattatatggatggtggttttatcagctagtaatcatt |
158 |
Q |
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||||||| |||||||| || ||||| ||| |||| |||| |
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| T |
1341 |
gtgattatttggatggttgtgttatctgctggtaagcatt |
1302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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