View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_15 (Length: 306)
Name: NF10499_low_15
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2512986 - 2513119
Alignment:
| Q |
1 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2512986 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
2513085 |
T |
|
| Q |
101 |
taagcagtcattcctggcatacctgttttcagag |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
2513086 |
taagcagtcattcctggcatacctgttttcagag |
2513119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1459097 - 1458972
Alignment:
| Q |
1 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
1459097 |
tttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctacttcaaagaaaccagca |
1458998 |
T |
|
| Q |
101 |
taagcagtcattcctggcatacctgt |
126 |
Q |
| |
|
|||||||||||||| ||||||||||| |
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|
| T |
1458997 |
taagcagtcattccaggcatacctgt |
1458972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2428804 - 2428679
Alignment:
| Q |
1 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
2428804 |
tttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctacttcaaagaaaccagca |
2428705 |
T |
|
| Q |
101 |
taagcagtcattcctggcatacctgt |
126 |
Q |
| |
|
|||||||||||||| ||||||||||| |
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|
| T |
2428704 |
taagcagtcattccaggcatacctgt |
2428679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 2506373 - 2506497
Alignment:
| Q |
1 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
2506373 |
tttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttggtagcgcctacttcaaagaaaccagca |
2506472 |
T |
|
| Q |
101 |
taagcagtcattcctggcatacctg |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
2506473 |
taagcagtcattcctggcatacctg |
2506497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 2513178 - 2513293
Alignment:
| Q |
193 |
ttcataagcttagttgcatgctatatactaagattcattctgaaaacg--taatgtatactcagaaaataaacataaaattgcacataaaaactacaaac |
290 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2513178 |
ttcataagcttagttgcatactatatactaagattcattctgaaaacgcataatgtatactcagaaaataaacataaaattgcacataaaaactacaaac |
2513277 |
T |
|
| Q |
291 |
gttgagtagattatac |
306 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
2513278 |
gttgagtagattatac |
2513293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 2517346 - 2517471
Alignment:
| Q |
1 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | |
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|
| T |
2517346 |
tttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgaaacaaaaacattctctccttttttcggagagcctacttcaaagaaaccagca |
2517445 |
T |
|
| Q |
101 |
taagcagtcattcctggcatacctgt |
126 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
2517446 |
taagcggtcattcctggcatacctgt |
2517471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2497646 - 2497776
Alignment:
| Q |
1 |
tttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||| | |
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|
| T |
2497646 |
tttagcgaattgaccaacaagttgaccgactgcaccagaggcagctgaaacaaaaacagtctctcctttcttaggactgcctagttcaaagaaaccagca |
2497745 |
T |
|
| Q |
101 |
taagcagtcattcctggcatacctgttttca |
131 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |
|
|
| T |
2497746 |
taagcagttattcctggcatacctgtgttca |
2497776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 2435164 - 2435046
Alignment:
| Q |
8 |
aattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaataagcag |
107 |
Q |
| |
|
||||| || |||||||||||||| || || || |||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||| ||| |||| |
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|
| T |
2435164 |
aattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacattctctcctttcttaggactgcctaattcaaagaaaccagcatatgcag |
2435065 |
T |
|
| Q |
108 |
tcattcctggcatacctgt |
126 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
2435064 |
tcattcccggcatacctgt |
2435046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 2431774 - 2431656
Alignment:
| Q |
8 |
aattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctacttcaaagaaaccagaataagcag |
107 |
Q |
| |
|
||||||||||||||||||||||| || | || || ||||||||| ||||||| ||||||||||| ||| ||||| ||||||||||||| ||| |||| |
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|
| T |
2431774 |
aattggccaacaagttgaccaacagcactggatgccgctgaaacataaacattttctcctttcttaggactgcctaattcaaagaaaccaacatatgcag |
2431675 |
T |
|
| Q |
108 |
tcattcctggcatacctgt |
126 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
2431674 |
tcaatcccagcatacctgt |
2431656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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