View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10499_low_16 (Length: 297)
Name: NF10499_low_16
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 4179338 - 4179607
Alignment:
| Q |
19 |
cctctactagctggtcgagtccaaaaaagggacataacaggattggaaattgtgtctaatgattctggaattcgactattagaggctcattaccctacaa |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4179338 |
cctctactggctggtcgagtccaaaaaagggacataacaggattggaaattgtgtctaatgattctggaattcgactcttagaggctcattaccctacaa |
4179437 |
T |
|
| Q |
119 |
gcttatctgagttccttgagtcgaataaaaatgaacacgatgatgatcatgaggctcaccttgttttctggaatgaaattgatggccaatttcctctgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179438 |
gcttatctgagttccttgagtcgaataaaaatgaacacgatgatgatcatgaggctcgccttgttttctggaatgaaattgatggccaatttcctctgtt |
4179537 |
T |
|
| Q |
219 |
ctctcccctcttttatgttcaggcaaatatattcacatatttattttatttaatttttggtaaatgatgt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179538 |
ctctcccctcttttatgttcaggcaaatatattcacatatttattttatttaatttttggtaaatgatgt |
4179607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University