View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10499_low_17 (Length: 289)
Name: NF10499_low_17
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 40 - 273
Target Start/End: Complemental strand, 41310953 - 41310720
Alignment:
| Q |
40 |
aattgtggcgatattgttggaccagctaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgcttta |
139 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41310953 |
aattgtggcgatattgttggaccagccaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgcttta |
41310854 |
T |
|
| Q |
140 |
tgagatcccaaatggcactgtatacagagtctctactttcactaaacttaagatgactagtgataccaaactagaagaatttgattgtgaaattttggta |
239 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41310853 |
tgagatcccaaatggcggtgtatacagagtctctactttcactaaacttaagatgactagtgataccaaactagaagaatttgattgtgaaatattggta |
41310754 |
T |
|
| Q |
240 |
tttatcattttattgatatctatcttgtattatg |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
41310753 |
tttatcattttactgatatctatcttgtattatg |
41310720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 43164465 - 43164382
Alignment:
| Q |
186 |
cttaagatgactagtgataccaaactagaagaatttgattgtgaaattttggtatttatcattttattgatatctatcttgtat |
269 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||| | ||||| ||||||||||||||||| |
|
|
| T |
43164465 |
cttaagatgaccagtgataacaaactagaagaatttgattgtgaaatattcatatttacctttttagtgatatctatcttgtat |
43164382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 43164627 - 43164540
Alignment:
| Q |
44 |
gtggcgatattgttggaccag---ctaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtga |
128 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||| |||||| ||| ||||||| |||||| |||||||||||||| |||| |
|
|
| T |
43164627 |
gtggtgatattgttggaccagttgctgatggtggattagcgaagcttgatgacaaaggaggcctgctagagtatcactcctatggtga |
43164540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 30165994 - 30166107
Alignment:
| Q |
69 |
tggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgctttatgagatcccaaatggcactgtatacagag |
168 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| | ||||||| |||||| ||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
30165994 |
tggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttactttatgagatcccaaatggcggtgtatatagag |
30166093 |
T |
|
| Q |
169 |
tctctactttcact |
182 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
30166094 |
tctctgctttcact |
30166107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 30166128 - 30166220
Alignment:
| Q |
186 |
cttaagatgactagtgataccaaactagaaga-----atttgattgtgaaattttggtatttatcattttattgatatctatcttgtattatg |
273 |
Q |
| |
|
|||||||| |||||||||||||||| | |||| ||||||||||||||| || |||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
30166128 |
cttaagataactagtgataccaaacaataagaatttgatttgattgtgaaatatttgtattttccattttactgatattgatcttgtattatg |
30166220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University