View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_18 (Length: 276)
Name: NF10499_low_18
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 31269010 - 31269248
Alignment:
| Q |
20 |
atgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaagaatttctcc |
119 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269010 |
atgaaagactgagctttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaagaatttctcc |
31269109 |
T |
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| Q |
120 |
cacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269110 |
cacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaag |
31269209 |
T |
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| Q |
220 |
ctctccaaaataattcctcttcattcatatcatgcatag |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31269210 |
ctctccaaaataattcctcttcattcatatcatgcatag |
31269248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 54479141 - 54479379
Alignment:
| Q |
20 |
atgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaagaatttctcc |
119 |
Q |
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|||||| |||||| ||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54479141 |
atgaaacactgagctttgagtataaaccatttcattgaaagaaggattaggatgtatgtagatagaatataacccttcatttcctttgaagaatttctcc |
54479240 |
T |
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| Q |
120 |
cacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaag |
219 |
Q |
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| T |
54479241 |
caaagtggagccaacaaaacaggacctattgtcaagaacataaacgcaacctttggtgtttgtttgaatggagttttatgaatcataggttccaatgaag |
54479340 |
T |
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| Q |
220 |
ctctccaaaataattcctcttcattcatatcatgcatag |
258 |
Q |
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|||||||||| ||||| || |||||||| |||||||||| |
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| T |
54479341 |
ctctccaaaacaattcatcctcattcatgtcatgcatag |
54479379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 1139589 - 1139358
Alignment:
| Q |
27 |
actgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaagaatttctcccacaaag |
126 |
Q |
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|||||| |||||| |||||| ||||||||||| |||||| | ||||||| |||||| |||||||||||||| |||||||| |||||||||||||| | | |
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| T |
1139589 |
actgagctttgattataaactgtttcattgaaggaaggactaggatgaacgtagatcgaatacaacccttcgtttcctttaaagaatttctcccaaagcg |
1139490 |
T |
|
| Q |
127 |
gagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaagctctcca |
226 |
Q |
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||||||| |||| | | ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||| || ||||||||||| |
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| T |
1139489 |
gagccaacaaaataggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctcca |
1139390 |
T |
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| Q |
227 |
aaataattcctcttcattcatatcatgcatag |
258 |
Q |
| |
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||||||||| || |||||||| |||||||||| |
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| T |
1139389 |
aaataattcatcctcattcatgtcatgcatag |
1139358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 1136385 - 1136147
Alignment:
| Q |
20 |
atgaaagactgagttttgatcataaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaagaatttctcc |
119 |
Q |
| |
|
|||||| ||| || |||||| |||||| ||||||||||| ||||| | ||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
1136385 |
atgaaacactaagctttgattataaacggtttcattgaaggaagggctaggatgaacgtagatcgaatacaacccttcgtttcctttgaagaatttctcc |
1136286 |
T |
|
| Q |
120 |
cacaaaggagccaataaaacatgtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaag |
219 |
Q |
| |
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|| | ||||| || |||||| | ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||| || |||| |
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| T |
1136285 |
caaagcggagctaacaaaacaggaccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaag |
1136186 |
T |
|
| Q |
220 |
ctctccaaaataattcctcttcattcatatcatgcatag |
258 |
Q |
| |
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|||||||||||||||| || || ||||| |||||||||| |
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| T |
1136185 |
ctctccaaaataattcatcctcgttcatgtcatgcatag |
1136147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 253
Target Start/End: Original strand, 48324370 - 48324581
Alignment:
| Q |
42 |
taaaccgtttcattgaaagaaggatttggatgaatgtagatagaatacaacccttcatttcctttgaagaatttctcccacaaaggagccaataaaacat |
141 |
Q |
| |
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|||||||||| ||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| || || || |
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| T |
48324370 |
taaaccgtttgattgaaagatggacttggatgaatgtagattgaatacatcccttcatttcctttgaagaatttctcccaaaaaggagctaacaagacgg |
48324469 |
T |
|
| Q |
142 |
gtcctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaagctctccaaaataattcctcttc |
241 |
Q |
| |
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| ||||| |||||||||||||| |||| ||||||| |||| ||||| ||||||| |||||||||| ||||| ||||| ||| | ||| ||||| || || |
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| T |
48324470 |
gaccttttgtcaaaaacataaaggcaatctttggtgtttgattgaacggaggttcgtgaatcatagaaatcaacgaagttcttcgaaacaattcatcatc |
48324569 |
T |
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| Q |
242 |
attcatatcatg |
253 |
Q |
| |
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||||||||||| |
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| T |
48324570 |
gttcatatcatg |
48324581 |
T |
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