View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_19 (Length: 270)
Name: NF10499_low_19
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 35744433 - 35744177
Alignment:
| Q |
1 |
tctaacacctagatctgtgctccctgaattcatgaaacactcttcaagatctagtgaaagtccaagaagttcctgtgcctcaccgcgtctttggtctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744433 |
tctaacacctagatctgtgctccctgaattcatgaaacactcttcaagatctagtgaaagtccaagaagttcctgtgcctcaccgcgtctttggtctctt |
35744334 |
T |
|
| Q |
101 |
agagtccaagctgttggaaagttgaatccagttgaagttaaacgtttgtctttcaatatgtcaccaacgcatatcgtaaaaatagacgaggaaccaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744333 |
agagtccaagctgttggaaagttgaatccagttgaagttaaacgtttgtctttcaatatgtcaccaacgcatatcgtaaaaatagacgaggaaccaataa |
35744234 |
T |
|
| Q |
201 |
cagaaatggaagtggatgataataagcctgtaaaggatacatcagaggatcttgtct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744233 |
cagaaatggaagtggatgataataagcctgtaaaggatacatcagaggatcttgtct |
35744177 |
T |
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