View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_20 (Length: 257)
Name: NF10499_low_20
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_20 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 3903588 - 3903336
Alignment:
| Q |
11 |
gaggagcagagagatggtgtagaatttaggagaagaggaagtcatttcctaatgtagttgatattttgttc--------tttatgagaattggttcaaca |
102 |
Q |
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| T |
3903588 |
gaggaacagaaagatggtgtagaatttaggagaagaggaagtcatttcctaatgtagttgatattttgttcaacaagtgtgtatatatatttcttcaaaa |
3903489 |
T |
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| Q |
103 |
agtgtgtatacatatttgtcgctgatcctcttcttgtttcttgtagaataattgatacaatcgaatagttattgcaagctttgcatgtatcacctttcta |
202 |
Q |
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| T |
3903488 |
aaagtgttga--tatttgtcgctgatccttttcttgtttcttgtagaataattgttacaatcgaatagttattgcaagctttgcatgtatcacctttcta |
3903391 |
T |
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| Q |
203 |
tcttgggatattcattatttattttcttgtctagtagtactcttgcttctccctc |
257 |
Q |
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| T |
3903390 |
tcttgggatattcattatttattttcttgtctagtagtactcttgcttctccctc |
3903336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 3906217 - 3906100
Alignment:
| Q |
139 |
tttcttgtagaataattgatacaatcgaatagttattgcaagctttgcatgtatcacctttctatcttgggatattcattatttattttcttgtctagta |
238 |
Q |
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| T |
3906217 |
tttcttgtagaaaaattgatacaatcgaatagtttttgcaagctttccatgtatcacctttctatcttgggatattcattatttattttcttgtcca-ta |
3906119 |
T |
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| Q |
239 |
gtactcttgcttctccctc |
257 |
Q |
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| T |
3906118 |
gtactgttgcttctccctc |
3906100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 3906406 - 3906310
Alignment:
| Q |
11 |
gaggagcagagagatggtgtagaatttaggagaagaggaagtcatttcctaatgtagttgatattttgttctttatgagaattggttcaacaagtgt |
107 |
Q |
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| T |
3906406 |
gaggaacagaaagatgatgtagaatttaggagaagaggaagccatttcctaatgtagatgatattttgttcttcatgagaaatggttcaacaagtgt |
3906310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 3900438 - 3900343
Alignment:
| Q |
153 |
attgatacaatcgaatagttattgcaagctttgcatgtatcacctttctatcttgggatattcattatttattttcttgtctagtagtactcttgcttc |
251 |
Q |
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| T |
3900438 |
attgatacaaccgaagagttgttgcaaactttgcatgtatcaccttt-ta-cttggaatattcattattt-ttttcttgtctagtagtactctttcttc |
3900343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 3876539 - 3876444
Alignment:
| Q |
17 |
cagagagatggtgtagaatttaggagaagaggaagtcat---ttcctaatgtagttgatattttgttctttatgagaattggttcaacaagtgtgt |
109 |
Q |
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| T |
3876539 |
cagaaagatggcgtagaatttaggcgtagaggaagccatgcttgcttaatgtaaatgatgttttgttctttatgagaattgcttcaacaagtgtgt |
3876444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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