View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_23 (Length: 249)
Name: NF10499_low_23
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42272111 - 42272347
Alignment:
| Q |
1 |
gttccttacaagattgtcaacagagatggaaaaccatacattcaggttagagtgaaggatggtgagaccaaggtgttcagccctgaggaaatcagcgcca |
100 |
Q |
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| T |
42272111 |
gttccttacaagattgtcaacagagatggaaaaccatacattcaggttagagtaaaggatggtgagaccaaggtgttcagccctgaggaaatcagcgcca |
42272210 |
T |
|
| Q |
101 |
tgattctcggtaagatgaaggaaaccgccgaaggattccttggcaaaactattcgtgatgctgtggtcaccgtcccaggtaaagaagcaaattacaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272211 |
tgattctcggtaagatgaaggaaaccgccgaaggattccttggcaaaactattcgtgatgctgtggtcaccgtcccaggtaaagaagcaaattacaacct |
42272310 |
T |
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| Q |
201 |
tgttcctccggcattctctattgttttattcttctct |
237 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
42272311 |
tgttccttcggcattctctattgttttattcttctct |
42272347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 42324251 - 42324430
Alignment:
| Q |
1 |
gttccttacaagattgtcaacagagatggaaaaccatacattcaggttagagtgaaggatggtgagaccaaggtgttcagccctgaggaaatcagcgcca |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
42324251 |
gttccttacaagattgtcaacaaggatggaaaaccatacattcaggtcagagtaaaggatggtgagaccaaggtgttcagccctgaggaagtcagtgcca |
42324350 |
T |
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| Q |
101 |
tgattctcggtaagatgaaggaaaccgccgaaggattccttggcaaaactattcgtgatgctgtggtcaccgtcccaggt |
180 |
Q |
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||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
42324351 |
tgattctgactaagatgaaggaaaccgctgaagcattccttggcaagactattcgtgatgccgtggtcactgtcccaggt |
42324430 |
T |
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