View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_24 (Length: 248)
Name: NF10499_low_24
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 12540386 - 12540606
Alignment:
| Q |
16 |
gaaataacaacttcttttctatttaggttttcgaaagatggtattggagagtttaaacactccaatttggtcagagttaacatttctaaatttggtccac |
115 |
Q |
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| T |
12540386 |
gaaataacaacttcttttctatttaggttttcgaaagatggtattggagagtttaaacactccaatttggtcagagttaacatttctaaatttggtccac |
12540485 |
T |
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| Q |
116 |
aaaattttccatttgcttggatttgcaatgcaaagattttgcgtttagaactggtatgactatcactactcatcgctagctaaagttatattaagttgga |
215 |
Q |
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| T |
12540486 |
aaaattttccatttgcttggatttgcaatgcaaagattttgcgtttagaactggtatgactatcactactcatcgctagctaaagttatattaagttgga |
12540585 |
T |
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| Q |
216 |
acttatttcaaatgtttgtct |
236 |
Q |
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||||||||||||||||||||| |
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| T |
12540586 |
acttatttcaaatgtttgtct |
12540606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 12486235 - 12486448
Alignment:
| Q |
26 |
cttcttttctatttaggttttcgaaagatggtattggagagtttaaacact---ccaatttggtcagagttaacatttctaaatttggtccacaaaattt |
122 |
Q |
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| T |
12486235 |
cttctttactatgtaggttttcgaaagatggtattggagagtttaaacacttgcccaatttggttagagctaacatttctaaatttgttccaaaaagtat |
12486334 |
T |
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| Q |
123 |
tccatttgcttggatttgcaatgcaaagattttgcgtttagaactggtatgactatcactactcatcgctagctaaagttatattaagttggaacttatt |
222 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||| |
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| T |
12486335 |
tcaatttgcttggatttgcaatgcaaagtttttgcgtttagaactggtatgactatcactacatatcactagctaaagttccattaagttgaaacttatt |
12486434 |
T |
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| Q |
223 |
tcaaatgtttgtct |
236 |
Q |
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|| ||||||||||| |
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| T |
12486435 |
tctaatgtttgtct |
12486448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 12507667 - 12507880
Alignment:
| Q |
26 |
cttcttttctatttaggttttcgaaagatggtattggagagtttaaacact---ccaatttggtcagagttaacatttctaaatttggtccacaaaattt |
122 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||| ||| | | |
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| T |
12507667 |
cttctttactatgtaggttttcgaaagatggtattggagagtttaaacacttgcccaatttggttagagctaacatttctaaatttgttccaaaaagtat |
12507766 |
T |
|
| Q |
123 |
tccatttgcttggatttgcaatgcaaagattttgcgtttagaactggtatgactatcactactcatcgctagctaaagttatattaagttggaacttatt |
222 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||| |
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| T |
12507767 |
tcaatttgcttggatttgcaatgcaaagtttttgcgtttagaactggtatgactatcactacatatcactagctaaagttccattaagttgaaacttatt |
12507866 |
T |
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| Q |
223 |
tcaaatgtttgtct |
236 |
Q |
| |
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|| ||||||||||| |
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| T |
12507867 |
tctaatgtttgtct |
12507880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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