View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_25 (Length: 246)
Name: NF10499_low_25
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 2447198 - 2446991
Alignment:
| Q |
23 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaacccaaatactattgttattttatggtatctctacatat |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2447198 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaacccaaatactattgttattttatggcgtctctacatat |
2447099 |
T |
|
| Q |
123 |
gtgaagggaagtcttgaataaacttttatcaaatttatagaattaaaatgtcacacatgtttgcatcgtagaattagtcttgataagtggcaattttact |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447098 |
gtgaagggaagtcttgaataaacttttatcaaatttatataattaaaatgtcacacatgtttgcatcgtagaattagtcttgataagtggcaattttact |
2446999 |
T |
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| Q |
223 |
taaattca |
230 |
Q |
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|||||||| |
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| T |
2446998 |
taaattca |
2446991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 2679438 - 2679501
Alignment:
| Q |
23 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaacc |
86 |
Q |
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|||||||| ||||||||||||| || || |||||||||||||| |||||| ||||||||||||| |
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| T |
2679438 |
gaggcacatgccaaatataacaaaacaagagcattctgcatcacaaagttaataaagtcaaacc |
2679501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 2616874 - 2616813
Alignment:
| Q |
23 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaa |
84 |
Q |
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|||||||| ||||||||||||| || ||||||||||||||||| |||||| | ||||||||| |
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| T |
2616874 |
gaggcacatgccaaatataacaaaacaacagcattctgcatcacaaagttaacaaagtcaaa |
2616813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 2583702 - 2583641
Alignment:
| Q |
23 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaa |
84 |
Q |
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|||||||| ||||||||||||| | || | |||||||||||| |||||||||||||||||| |
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| T |
2583702 |
gaggcacatgccaaatataacaatacaataacattctgcatcacaaagttgataaagtcaaa |
2583641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 2646793 - 2646850
Alignment:
| Q |
26 |
gcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaa |
83 |
Q |
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||||| ||||||||||||| || || |||||||||||||| |||||||| |||||||| |
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| T |
2646793 |
gcacatgccaaatataacaaaacaatagcattctgcatcacaaagttgacaaagtcaa |
2646850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 2574606 - 2574670
Alignment:
| Q |
23 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaag-ttgataaagtcaaacc |
86 |
Q |
| |
|
|||||||| ||||||||||| | || ||||||||||||||||| |||| || ||||||||||||| |
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| T |
2574606 |
gaggcacatgccaaatataaaaaaagaacagcattctgcatcaaaaagtttaataaagtcaaacc |
2574670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 2602614 - 2602677
Alignment:
| Q |
23 |
gaggcacacgccaaatataacacaataacagcattctgcatcataaagttgataaagtcaaacc |
86 |
Q |
| |
|
|||||||| |||| |||||| | || ||||||||| ||||||| |||||| ||||||||||||| |
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| T |
2602614 |
gaggcacaagccagatataaaaaaagaacagcattgtgcatcaaaaagttaataaagtcaaacc |
2602677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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