View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_26 (Length: 245)
Name: NF10499_low_26
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_26 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 33305736 - 33305589
Alignment:
| Q |
98 |
ctagaataacatacatgatcagtggctcctgtatcaagaataaaagtttcaggtttaaggatattgggaatagtgcatattatacatgtgcctaatggtg |
197 |
Q |
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| T |
33305736 |
ctagaataacatacatgatcagtggctcctgtatcaagaataaaagtttcaggtttaaggatattgggaatagtgcatattatacatgtgcctaatggtg |
33305637 |
T |
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| Q |
198 |
aattgctggtaatatgatttacactatgagaaggcaatgtgtttgaat |
245 |
Q |
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| T |
33305636 |
aattgctggtaatatgatttacactatgagaaggcaatgtgtttgaat |
33305589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 33305772 - 33305743
Alignment:
| Q |
45 |
ccagttgttgatttgaataggttttactct |
74 |
Q |
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| T |
33305772 |
ccagttgttgatttgaataggttttactct |
33305743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 30870405 - 30870258
Alignment:
| Q |
98 |
ctagaataacatacatgatcagtggctcctgtatcaagaataaaagtttcaggtttaaggatattgggaatagtgcatattatacatgtgcctaatggtg |
197 |
Q |
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| T |
30870405 |
ctagagtagcatacatgatcattggctcctgtatcaagaataaaggtttctagtttgatgagagtagggatagtgcagattatacttgtacctaatggtg |
30870306 |
T |
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| Q |
198 |
aattgctggtaatatgatttacactatgagaaggcaatgtgtttgaat |
245 |
Q |
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| T |
30870305 |
aatttgtggtcatgtgatttacactatgagaaggcaatgtgtttgaat |
30870258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 29351553 - 29351475
Alignment:
| Q |
167 |
atagtgcatattatacatgtgcctaatggtgaattgctggtaatatgatttacactatgagaaggcaatgtgtttgaat |
245 |
Q |
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| T |
29351553 |
atagtgctgattatacctgtacctaatggtgaattagtgataaggtgatttacaatatgagaagggaatgtgtttgaat |
29351475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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