View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10499_low_3 (Length: 443)
Name: NF10499_low_3
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 26747507 - 26747109
Alignment:
| Q |
17 |
aggagtaaggtcggatgggaaagaaattaactttgaatggatctttctaagaagcaaatggattgatgagagaatggtgaccataattacacacgtaaat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26747507 |
aggagtaaggacggatgggaaagaaattaactttgaatggatctttctaagaagcaaaaggattgatgagagaatggtgaccataattacacacgtaaat |
26747408 |
T |
|
| Q |
117 |
aaacacttggcaagaaaaataatttccaaacaacaatattagattgttttttgaaggaaaacaaacaatattagataaaa-tcatattatttttataaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26747407 |
aaacacttggcaagaaaaataatttccaaacaacaatattagactgttttttgaaggaaaacaa-caatattagataaaaatcatattatttttataaaa |
26747309 |
T |
|
| Q |
216 |
tttaaaacagtaagtaattatatatgctaatattccataatttgcattccttaacttgcacttttagacattcttttaaacagtatattgtatatacgca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26747308 |
tttaaaacagtaagtaattatatatgctaatattccataatttgcattccttaacttgcacttttagacattcttttaaacagtatattgtatatacgca |
26747209 |
T |
|
| Q |
316 |
tacacaatactaatgaaattaacctaactataagcagattggttgctaaagtgaaatttaatgttgacaaatactatatgatattgaaaattaaactact |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26747208 |
tacacaatactaatgaaattaacctaactccaagcagattggttgctaaagtgaaatttaatgttgacaaatactatatgatattgaaaattaaattact |
26747109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University