View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_31 (Length: 233)
Name: NF10499_low_31
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 44673795 - 44673997
Alignment:
| Q |
14 |
caaaggtgcttggacaaaagaagaagatgaacgtctcattaactacatcaagcttcatggggaaggttgttggaggtctcttccaaaagctgctggtata |
113 |
Q |
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| T |
44673795 |
caaaggtgcttggacaaaagaagaagatgaacgtctcattaactacatcaagcttcatggggaaggttgttggaggtctcttccaaaagctgctggtata |
44673894 |
T |
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| Q |
114 |
taacatactttatgttaattaatttcccactatatagaattaattaaatgtatatatacttaattccatttcttatag---atatgtagaattttaaatc |
210 |
Q |
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| T |
44673895 |
taacatactttatgttaattaatttcccactatatagaattaattaaatg----tacacttaattccatttcttatagatcatatgttgaattttaaatc |
44673990 |
T |
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| Q |
211 |
aatatat |
217 |
Q |
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||||||| |
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| T |
44673991 |
aatatat |
44673997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 39916426 - 39916527
Alignment:
| Q |
14 |
caaaggtgcttggacaaaagaagaagatgaacgtctcattaactacatcaagcttcatggggaaggttgttggaggtctcttccaaaagctgctggtata |
113 |
Q |
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||||||||||||| | || |||||||| |||||||| |||||||||||||| | || || |||||||| ||| | |||||||| ||||| || |||||| |
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| T |
39916426 |
caaaggtgcttggtctaaggaagaagacgaacgtcttattaactacatcaaacaacaaggagaaggttgctggcgttctcttcctaaagccgcaggtata |
39916525 |
T |
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| Q |
114 |
ta |
115 |
Q |
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|| |
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| T |
39916526 |
ta |
39916527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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