View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10499_low_32 (Length: 230)

Name: NF10499_low_32
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10499_low_32
NF10499_low_32
[»] chr2 (5 HSPs)
chr2 (11-87)||(12842311-12842387)
chr2 (100-170)||(12842030-12842100)
chr2 (91-170)||(12840979-12841065)
chr2 (35-85)||(12863081-12863131)
chr2 (129-170)||(12863198-12863239)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 12842387 - 12842311
Alignment:
Q  11 ggacatggagggaccgattgcctctatttgaatgcacctaattctgtcactatttggataaatacgacgaaatgata 87  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  12842387 ggacatggagggaccgattgcctatatttgaatgcacctaattctgtcactattgggataaatacaacgaaatgata 12842311  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 12842100 - 12842030
Alignment:
Q  100 ttttcttaaatagaagatggtctattatcaataaatgaaatgaaaaatcctatctatctcataatcagaga 170  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12842100 ttttcttaaatagaagatggtctattatcaataaatgaagtgaaaaatcatatctatctcataatcagaga 12842030  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 12841065 - 12840979
Alignment:
Q  91 tctagttgattttcttaaatagaagatggtctattatc-------aataaatgaaatgaaaaatcctatctatctcataatcagaga 170  Q
    |||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  12841065 tctagttgattttcttaagtagaagatggtctattatctgtaagtaataaatgaaatgaaaaatcctatctatctcataatcagaga 12840979  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12863081 - 12863131
Alignment:
Q  35 tatttgaatgcacctaattctgtcactatttggataaatacgacgaaatga 85  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  12863081 tatttgaatgcacctaattctgtcactgtttggataaatacaacgagatga 12863131  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 12863198 - 12863239
Alignment:
Q  129 aataaatgaaatgaaaaatcctatctatctcataatcagaga 170  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  12863198 aataaatgaaatgaaaaatcctatctgtctcataatcagaga 12863239  T

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