View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_34 (Length: 226)
Name: NF10499_low_34
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 33305564 - 33305347
Alignment:
| Q |
1 |
tgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33305564 |
tgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtatt |
33305465 |
T |
|
| Q |
101 |
agaacaattattgatcatgtcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgtgaccacttctgacacaaaagaac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33305464 |
agaacaattattgatcatatcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgtgaccacttctgccacaaaagaac |
33305365 |
T |
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| Q |
201 |
aaattctgatgcctttgc |
218 |
Q |
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|||||||||||||||||| |
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| T |
33305364 |
aaattctgatgcctttgc |
33305347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30870233 - 30870019
Alignment:
| Q |
1 |
tgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtatt |
100 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||| | |||||||| ||| |||||||| ||||||||||| |||| || |
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| T |
30870233 |
tgtgctgctctgaagtgaaagataactttcctgtgtctgcatcatgagtatcttcaccatatgcaatggaatgtgaatcaccttcttgtccagtagtgtt |
30870134 |
T |
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| Q |
101 |
agaacaattattgatcatgtcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgtgaccacttctgacacaaaa-gaa |
199 |
Q |
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||||||||||||||||||| |||||||| ||||||| | || | |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
30870133 |
agaacaattattgatcatgccattttgcggaaaatgag--gggataccatgcttcttgaaacatgtatctatggtgtgaccacttctcccacaaaaggaa |
30870036 |
T |
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| Q |
200 |
caaattctgatgccttt |
216 |
Q |
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|||| |||||||||||| |
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| T |
30870035 |
caaactctgatgccttt |
30870019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 29351430 - 29351278
Alignment:
| Q |
21 |
gataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtattagaacaattattgatcatgt |
120 |
Q |
| |
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||||| |||| ||||| || |||||||| |||||||||||||||||| ||| ||||||||| | || ||||||| ||| |||||||| || |||| |
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| T |
29351430 |
gataactttcttgtgtgtgtatcatgagtatcttcatcgtatgcaattgaa--tgaatcatcctattctccattaacattgaaacaattaatgttcatac |
29351333 |
T |
|
| Q |
121 |
cattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggt |
175 |
Q |
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| T |
29351332 |
cgttttgctaaaaataaggaggtacaccatgcttcatgaaacatgtgtctttggt |
29351278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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