View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_35 (Length: 219)
Name: NF10499_low_35
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 48185282 - 48185457
Alignment:
| Q |
19 |
gacatcatccctatgaaatttgacctcatgtgttgttctcggattgccgagttttccgcaaagaaccaagtggtcaaaatcatattgccaaaggaattcc |
118 |
Q |
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| T |
48185282 |
gacatcatcc-tatgaaatttgacctcacatgttgttctcggattgccgagttttccgcaaagaaccaagtggtcaaaatcatattgccaaaggaactcc |
48185380 |
T |
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| Q |
119 |
ttgaaatctcgattaaggacctaaatatggtagacaatatacatatatacgattaaaagaagtattcaaaagataga |
195 |
Q |
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| T |
48185381 |
ttgaaatctcgattaaggacctgaatatggtagacaatatacatatatacgattaaaagaagtattcaaaagataga |
48185457 |
T |
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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 19341431 - 19341302
Alignment:
| Q |
70 |
ttttccgcaaagaaccaagtggtcaaaatcatattgccaaaggaattccttgaaatctcgattaaggacctaaatatggtagacaatatacatatatacg |
169 |
Q |
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||||||||| || |||||||||| ||||||||||||| ||||||| || ||||||||||||||||| || |||| ||| ||| |||| | ||||||||| |
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| T |
19341431 |
ttttccgcataggaccaagtggttaaaatcatattgcgaaaggaagtctttgaaatctcgattaagcacgtaaacatgataggcaatgt--atatatacg |
19341334 |
T |
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| Q |
170 |
attaaaagaagtattcaaaagatagaaataaa |
201 |
Q |
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| T |
19341333 |
gttaaaagaagtattcaaaggatagaaataaa |
19341302 |
T |
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