View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_36 (Length: 211)
Name: NF10499_low_36
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_36 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 376938 - 377148
Alignment:
| Q |
1 |
cgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagtt |
100 |
Q |
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| T |
376938 |
cgttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagtt |
377037 |
T |
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| Q |
101 |
ggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggtaccaaaa |
200 |
Q |
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| T |
377038 |
ggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggtaccaaaa |
377137 |
T |
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| Q |
201 |
atattgatgaa |
211 |
Q |
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| T |
377138 |
atattgatgaa |
377148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 347551 - 347394
Alignment:
| Q |
8 |
tgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttggtcaag |
107 |
Q |
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| T |
347551 |
tgtgagaaagcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaag |
347452 |
T |
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| Q |
108 |
agaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatataga |
165 |
Q |
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| T |
347451 |
agaaaaaaatgaccaaagcatgcaaagtatttgatcaatttgtatatgcaaatataga |
347394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 356210 - 356050
Alignment:
| Q |
8 |
tgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttggtcaag |
107 |
Q |
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| T |
356210 |
tgtgagaaggctttcaaccaaatcgaagagggcatattctatagacataaagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaag |
356111 |
T |
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| Q |
108 |
agaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtc |
168 |
Q |
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| T |
356110 |
agaaaaatatgaccaaggcatgcaaaacctatgatcaatttgtatatgcaaatataaagtc |
356050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 332904 - 333049
Alignment:
| Q |
2 |
gttgcttgtgagaaggcttttgaccaaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttg |
101 |
Q |
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| T |
332904 |
gttgcgtgtgagaaggcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgtttagaagatgcaaaaatggcttcaaattg |
333003 |
T |
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| Q |
102 |
gtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatt |
147 |
Q |
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| T |
333004 |
gggaagagaaaaaaatgaccgaggcatgcaaagtatttgataaatt |
333049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 337248 - 337312
Alignment:
| Q |
92 |
cttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattc |
156 |
Q |
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| T |
337248 |
cttcaaatcggtgaagagaaaaaaatgactgaagcatgcaaagtatttgatcaattcctatattc |
337312 |
T |
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