View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10499_low_37 (Length: 208)

Name: NF10499_low_37
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10499_low_37
NF10499_low_37
[»] chr3 (13 HSPs)
chr3 (100-208)||(4826460-4826570)
chr3 (91-208)||(4835202-4835321)
chr3 (91-208)||(4852536-4852655)
chr3 (91-208)||(4856507-4856626)
chr3 (91-208)||(4878242-4878361)
chr3 (91-208)||(4841888-4842006)
chr3 (108-208)||(4871588-4871689)
chr3 (112-208)||(4860805-4860904)
chr3 (112-208)||(4880812-4880911)
chr3 (108-208)||(4845829-4845930)
chr3 (1-30)||(4846096-4846125)
chr3 (1-30)||(4856705-4856734)
chr3 (1-30)||(4878440-4878469)
[»] chr7 (2 HSPs)
chr7 (127-208)||(21703747-21703830)
chr7 (38-83)||(21703668-21703713)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 4826570 - 4826460
Alignment:
Q  100 atttagtaaatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataa--ctctatgtcttatacaccaacactaataata 197  Q
    |||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |||  |||||||| |||| |||||||||||||||||    
T  4826570 atttagtaaatgacttagattgaccataaactcacattgagtctctaactagtataaaaccagttaactctctatgtattatgcaccaacactaataata 4826471  T
Q  198 atatcacttct 208  Q
    |||||||||||    
T  4826470 atatcacttct 4826460  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 4835321 - 4835202
Alignment:
Q  91 aatttagatatttagtaaatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataactc--tatgtcttatacaccaaca 188  Q
    ||||| || ||||||||||||||||||||| |||||| |||||| ||||| |||||| |||||||||||||| ||||||  ||||| |||| ||||||||    
T  4835321 aattttgacatttagtaaatgactttgattgaccataaactcactttgagtctctaattagtataaaaccagttaactccatatgtattatgcaccaaca 4835222  T
Q  189 ctaataataatatcacttct 208  Q
    ||||||||||||||||||||    
T  4835221 ctaataataatatcacttct 4835202  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 4852655 - 4852536
Alignment:
Q  91 aatttagatatttagtaaatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataactc--tatgtcttatacaccaaca 188  Q
    ||||| || |||||||||||||||| |||  |||||| |||||||||||| |||||||||||||||||||||   ||||  ||||| |||| ||||||||    
T  4852655 aattttgacatttagtaaatgacttagatcgaccataaactcacattgagtctctaactagtataaaaccagtatactccatatgtattatgcaccaaca 4852556  T
Q  189 ctaataataatatcacttct 208  Q
    |||||||| |||||||||||    
T  4852555 ctaataattatatcacttct 4852536  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 4856626 - 4856507
Alignment:
Q  91 aatttagatatttagtaaatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataactc--tatgtcttatacaccaaca 188  Q
    ||||| || |||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||||||||||   ||||  ||||| |||| ||||||||    
T  4856626 aattttgacatttagtacatgacttagattgaccataaactcacattgagtctctaactagtataaaaccagtatactccatatgtattatgcaccaaca 4856527  T
Q  189 ctaataataatatcacttct 208  Q
    |||||||| |||||||||||    
T  4856526 ctaataattatatcacttct 4856507  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 4878361 - 4878242
Alignment:
Q  91 aatttagatatttagtaaatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataactc--tatgtcttatacaccaaca 188  Q
    ||||| || |||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||||||||||   ||||  ||||| |||| ||||||||    
T  4878361 aattttgacatttagtacatgacttagattgaccataaactcacattgagtctctaactagtataaaaccagtatactccatatgtattatgcaccaaca 4878262  T
Q  189 ctaataataatatcacttct 208  Q
    |||||||| |||||||||||    
T  4878261 ctaataattatatcacttct 4878242  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 4842006 - 4841888
Alignment:
Q  91 aatttagatatttagtaaatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataactc--tatgtcttatacaccaaca 188  Q
    ||||| || ||||||||||| |||| |||| |||||| |||||||||||| |||||| |||||||||||||| ||| ||  ||||| |||| ||||||||    
T  4842006 aattttgacatttagtaaataacttagattgaccataaactcacattgagtctctaattagtataaaaccagttaattccatatgtattatgcaccaaca 4841907  T
Q  189 ctaataataatatcacttct 208  Q
    | ||||||||||||||||||    
T  4841906 c-aataataatatcacttct 4841888  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 4871689 - 4871588
Alignment:
Q  108 aatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataactc--tatgtcttatacaccaacactaataataatatcact 205  Q
    |||||||| |||| |||||| |||||||||||| |||||||||||||||| |||| ||||||  ||||| |||| ||||||||| |||||||||||||||    
T  4871689 aatgacttagattgaccataaactcacattgagtctctaactagtataaagccagttaactccatatgtattatgcaccaacac-aataataatatcact 4871591  T
Q  206 tct 208  Q
    |||    
T  4871590 tct 4871588  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 4860904 - 4860805
Alignment:
Q  112 actttgattcaccatacactcacattgagcctctaactagtataaaaccag-ataact--ctatgtcttatacaccaacactaataataatatcacttct 208  Q
    ||||||||| || ||| |||||||||||| |||||||||||||||||||||  |||||  |||||| |||| |||||||||||||||| |||||||||||    
T  4860904 actttgattgacgatagactcacattgagtctctaactagtataaaaccagtttaactccctatgtattatgcaccaacactaataattatatcacttct 4860805  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 4880911 - 4880812
Alignment:
Q  112 actttgattcaccatacactcacattgagcctctaactagtataaaaccag-ataact--ctatgtcttatacaccaacactaataataatatcacttct 208  Q
    ||||||||| || ||| |||||||||||| |||||||||||||||||||||  |||||  |||||| |||| |||||||||||||||| |||||||||||    
T  4880911 actttgattgacgatagactcacattgagtctctaactagtataaaaccagtttaactccctatgtattatgcaccaacactaataattatatcacttct 4880812  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 4845930 - 4845829
Alignment:
Q  108 aatgactttgattcaccatacactcacattgagcctctaactagtataaaaccagataact--ctatgtcttatacaccaacactaataataatatcact 205  Q
    |||||||| |||| |||| | | |||||||||| |||||||||||||||| |||| |||||  |||||| |||| ||||||||| |||||||||||||||    
T  4845930 aatgacttagattgaccaaaaaatcacattgagtctctaactagtataaagccagttaactacctatgtattatgcaccaacac-aataataatatcact 4845832  T
Q  206 tct 208  Q
    |||    
T  4845831 tct 4845829  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4846125 - 4846096
Alignment:
Q  1 atggtcttgttgtgtggaaaattaaaggat 30  Q
    ||||||||||||||||||||||||||||||    
T  4846125 atggtcttgttgtgtggaaaattaaaggat 4846096  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4856734 - 4856705
Alignment:
Q  1 atggtcttgttgtgtggaaaattaaaggat 30  Q
    ||||||||||||||||||||||||||||||    
T  4856734 atggtcttgttgtgtggaaaattaaaggat 4856705  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4878469 - 4878440
Alignment:
Q  1 atggtcttgttgtgtggaaaattaaaggat 30  Q
    ||||||||||||||||||||||||||||||    
T  4878469 atggtcttgttgtgtggaaaattaaaggat 4878440  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 21703747 - 21703830
Alignment:
Q  127 acactcacattgagcctctaactagtataaaaccagataact--ctatgtcttatacaccaacactaataataatatcacttct 208  Q
    |||||| ||||||| ||||||||||||||||||| | |||||  ||||||||||| |||||||||||||| |||||||||||||    
T  21703747 acactcccattgagtctctaactagtataaaaccggttaacttcctatgtcttatgcaccaacactaatattaatatcacttct 21703830  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 21703668 - 21703713
Alignment:
Q  38 ttttccaaatacatgggacctatgaatgtaacattgttgaataatt 83  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||    
T  21703668 ttttccaaatacaaggaacctatgagtgtaacattgttgaataatt 21703713  T

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