View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10499_low_38 (Length: 206)

Name: NF10499_low_38
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10499_low_38
NF10499_low_38
[»] chr1 (13 HSPs)
chr1 (12-191)||(47718048-47718227)
chr1 (17-190)||(47713255-47713428)
chr1 (14-190)||(47760170-47760346)
chr1 (17-190)||(47745838-47746011)
chr1 (19-188)||(6521594-6521763)
chr1 (17-190)||(6523594-6523767)
chr1 (22-104)||(6507056-6507138)
chr1 (19-104)||(6512957-6513042)
chr1 (15-96)||(6517364-6517445)
chr1 (13-51)||(47772945-47772983)
chr1 (12-68)||(6500263-6500319)
chr1 (23-71)||(47673751-47673799)
chr1 (144-188)||(47778037-47778081)
[»] chr5 (4 HSPs)
chr5 (12-183)||(28856511-28856682)
chr5 (12-186)||(28861785-28861959)
chr5 (12-176)||(28831322-28831486)
chr5 (12-80)||(27371748-27371816)
[»] scaffold0341 (2 HSPs)
scaffold0341 (22-104)||(1081-1163)
scaffold0341 (22-104)||(8735-8817)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 47718227 - 47718048
Alignment:
Q  12 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718227 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtt 47718128  T
Q  112 tgccgaagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgt 191  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718127 tgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgt 47718048  T

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Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 47713428 - 47713255
Alignment:
Q  17 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||    
T  47713428 aaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccg 47713329  T
Q  117 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatg 190  Q
     |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47713328 cagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatg 47713255  T

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Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 47760346 - 47760170
Alignment:
Q  14 cagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttg 113  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||    
T  47760346 cagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttg 47760247  T
Q  114 ccgaagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatg 190  Q
    ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47760246 ccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatg 47760170  T

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Target: chr1; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 47746011 - 47745838
Alignment:
Q  17 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  47746011 aaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccgacctttgccg 47745912  T
Q  117 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatg 190  Q
     |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  47745911 cagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatg 47745838  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 6521594 - 6521763
Alignment:
Q  19 atcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccgaa 118  Q
    ||||||||||||||||| |||| |||||||||  | ||||||||||||||||||||  |||| || || ||||||||||| ||||   | | ||| | ||    
T  6521594 atcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaa 6521693  T
Q  119 gttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggta 188  Q
     ||  |||||  ||||||  |||||||| ||| ||| ||||| ||||| ||||||||| ||||| |||||    
T  6521694 attgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggta 6521763  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 6523594 - 6523767
Alignment:
Q  17 aaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccg 116  Q
    ||||||||||||||||||||||||||||  | ||  |||||||  |||||||||||||  |||| || |||||||| ||||||||  |  |||  || |     
T  6523594 aaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtct 6523693  T
Q  117 aagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatg 190  Q
     ||||  ||||||| ||||||      ||||||| | ||||||||||||||||||||||| |||||||||||||    
T  6523694 tagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatg 6523767  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 6507138 - 6507056
Alignment:
Q  22 aactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 104  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  6507138 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 6507056  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 6513042 - 6512957
Alignment:
Q  19 atcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 104  Q
    ||||||||||||||||| |||| |||||||||   |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  6513042 atcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 6512957  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 6517445 - 6517364
Alignment:
Q  15 agaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagat 96  Q
    ||||||||||||||||||||| || | ||||||||||  |||||  ||||||||||||||  |||| || ||||||||||||    
T  6517445 agaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 6517364  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 47772945 - 47772983
Alignment:
Q  13 acagaaatcaactacggtttctacaatttctcttatggc 51  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  47772945 acagaaatcaactacggtttctacaatttctcatatggc 47772983  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 6500319 - 6500263
Alignment:
Q  12 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagt 68  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||||  ||||||||    
T  6500319 cacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagt 6500263  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 47673751 - 47673799
Alignment:
Q  23 actacggtttctacaatttctcttatggccaaaacactgacaaagtaaa 71  Q
    |||||||||||||||||||||| |||||| || |  |||||||||||||    
T  47673751 actacggtttctacaatttctcgtatggcgaagaacctgacaaagtaaa 47673799  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 47778037 - 47778081
Alignment:
Q  144 tctcacaaaactttgtccaaaccaaaaagaagcgattggttggta 188  Q
    ||||||| |||||||||||||| |||| ||||| |||||||||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggta 47778081  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 28856682 - 28856511
Alignment:
Q  12 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtt 111  Q
    ||||||||||| ||||||||||||||| ||||| |  ||| || |||   |||||||| ||||| | ||  | ||||||||||||||||| ||  | | |    
T  28856682 cacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgat 28856583  T
Q  112 tgccgaagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggt 183  Q
    ||||| |||| ||| ||  |||||||||||||||| ||| ||  |||||||||| |||||||||| ||||||    
T  28856582 tgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggt 28856511  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 28861959 - 28861785
Alignment:
Q  12 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtt 111  Q
    ||||||||||| ||||||||||||||| ||||| |  ||| || |||   |||||||| ||||| | ||  | ||||||||||||||||| ||  | | |    
T  28861959 cacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgat 28861860  T
Q  112 tgccgaagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttgg 186  Q
    ||||| |||| ||| ||  |||||||||||||||| ||| ||   ||||| |||||||||||||| |||||||||    
T  28861859 tgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttgg 28861785  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 28831486 - 28831322
Alignment:
Q  12 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtt 111  Q
    ||||||||||| ||||||||||||||| ||||| || ||| ||  ||   |||||||| ||||| | ||  | || |||||||||||||| ||  | | |    
T  28831486 cacagaaatcacctacggtttctacaacttctcatacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgttaatccaaatgat 28831387  T
Q  112 tgccgaagttatctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagc 176  Q
    |||||  ||||||| ||  |||||||||||||||| ||| ||  |||||||||||||||||||||    
T  28831386 tgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagc 28831322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 27371816 - 27371748
Alignment:
Q  12 cacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttgg 80  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||| || | |||||| |||| ||| ||||    
T  27371816 cacagaaattaactacggtttttacaatttctcatatggccaacacccagacaaaataaaggccattgg 27371748  T

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Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 1163 - 1081
Alignment:
Q  22 aactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 104  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  1163 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 1081  T

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Target: scaffold0341; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 8817 - 8735
Alignment:
Q  22 aactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 104  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  8817 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc 8735  T

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