View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_4 (Length: 431)
Name: NF10499_low_4
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_4 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 3 - 417
Target Start/End: Original strand, 36137485 - 36137899
Alignment:
| Q |
3 |
caaaggctctacattcacctattgcaatattgtcatcatccaaacacaccacgtcagggatggacccacttgtctcttgtcgatcatgcaattaatctga |
102 |
Q |
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| T |
36137485 |
caaaggctctacattcacctattgcaatattgtcatcatccaaacgcaccacgtcagggatggacccacttgtctcttgtcgatcatgcaattaatctga |
36137584 |
T |
|
| Q |
103 |
tctggtcccacattgacaatgtcctgtagaaaagctactaacttgtcgcactacttcttcgcaagtgccgattcacctttcaatttgtcgttgtcnnnnn |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36137585 |
tctggtcccacattgacaatgtcctgtagaaaagctactaacttgttgcactacttcttcgcaagtgccgattcacctttcaatttctcgttgtcttttt |
36137684 |
T |
|
| Q |
203 |
nnaatcttttgttctcaatggataaatcgggcaacgggtgtttggttctactgatcccgtcaaggttgatcccatatcttcagcaccagagtttcacgct |
302 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36137685 |
ttaatcttttgttctcaatggataaatcatgcaacgggtgtttggttctactgatcccgtcgaggttgatcccatatcttcagcaccagagtttcacgcc |
36137784 |
T |
|
| Q |
303 |
gagttcctgccgtcatcaacagattttacaactgctggcgactggggaacacttgattgctggcagcagctctatctgtcctcacttgaaattctagtag |
402 |
Q |
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| T |
36137785 |
gagttcctgccgtcatcaacagattttacaactgctggcgactggggaacacttgattgctggcagcagctccatctgtcctcacttgaaattctagtag |
36137884 |
T |
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| Q |
403 |
gcaaattcccatgtg |
417 |
Q |
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| T |
36137885 |
gcaaattcccatgtg |
36137899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 36137330 - 36137141
Alignment:
| Q |
88 |
atgcaattaatctgatctggtcccacattgacaatgtcctgtagaaaagctactaacttgtcgcactacttcttcgcaagtgccgattcacctttcaatt |
187 |
Q |
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| T |
36137330 |
atgcagttaacctgatcatgtcccacattgacagtatcccgtagaaaagctaccaactcgctgcactgcttcttt-cacgtgccaattcacagctcaatt |
36137232 |
T |
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| Q |
188 |
tgtcgttgtcnnnnnnnaatcttttgttctcaatggataaatcggg-caacgggtgtttggttctactgatcccgtcaaggttgatcccat |
277 |
Q |
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| T |
36137231 |
tctcgttctcttttatcaattttttgttctcacttgataaatcggggcaatgggtatttagttctactgatcctgttaaggttgaacccat |
36137141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 41339989 - 41340156
Alignment:
| Q |
66 |
acccacttgtctcttgtcgatcatgcaattaatctgat---ctggtcccacattgacaatgtcctgtagaaaagctactaacttgtcgcactacttcttc |
162 |
Q |
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| T |
41339989 |
acccacttgtcctttgtcgatgatgcggttaatctgatgatctgatcccacattgacaatgtcctgtagaaaagctactaacttgtcgcaccacttcttc |
41340088 |
T |
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| Q |
163 |
gcaagtgccgattcacctttcaatttgtcgttgtcnnnnnnnaatcttttgttctcaatggataaatc |
230 |
Q |
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| T |
41340089 |
gcaagtgccaattcaccggtcaatttatcgttgtctttttttaatcttttgttctcactggataaatc |
41340156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 41339941 - 41339980
Alignment:
| Q |
3 |
caaaggctctacattcacctattgcaatattgtcatcatc |
42 |
Q |
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| T |
41339941 |
caaaggctctacattcacctattgcaatgttgtcatcatc |
41339980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 23093 - 23023
Alignment:
| Q |
3 |
caaaggctctacattcacctattgcaatattgtcatcatccaaacacaccacgtcagggatggacccactt |
73 |
Q |
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| T |
23093 |
caaaggctcaagattcgcctattgcaatatcgtcatagtcaaaacgcaccacgtcaaggttggacccactt |
23023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 33493019 - 33493089
Alignment:
| Q |
270 |
gatcccatatcttcagcaccagagtttcacgctgagttcctgccgtcatcaacagattttacaactgctgg |
340 |
Q |
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| T |
33493019 |
gatcccatatcttcagcaccagagtttgaaggtgagttcccgccaactccaacagatcttacagctgctgg |
33493089 |
T |
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