View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_5 (Length: 427)
Name: NF10499_low_5
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 30288145 - 30287733
Alignment:
| Q |
1 |
aagaaaaggagtaaagaaacatagtttttattgaaattgtaagaacaagatttcaagagtttctatgtgtaa--aaaggatgattagaaaagccaagatt |
98 |
Q |
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| T |
30288145 |
aagaaaaggagtaaagaaacatagtttttattgaaattgtaagaacaagatttcaagagtttctatgtgtaagtaaaggatgattagaaaagcctagatt |
30288046 |
T |
|
| Q |
99 |
acaaccctatacatagccactaaacccataacaatgcagtaagctagacacaattgtgctgattattacatgaaagtagaaaccactagaagtcaaaaag |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30288045 |
acaaccctatacatagccactaaacccataacaatgcagtaagctagacacaattgtgctgattattacatgaaagttgaaaccactagaagtcaaaaag |
30287946 |
T |
|
| Q |
199 |
cataaacgacaattatgtggctgtaatgaattgctaacttgtgatattccagcttctcttgatttttggcaacggtttaattttaatcatttggaagtga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287945 |
cataaacgacaattatgtggctgtaatgaattgctaacttgtgatattccagcttctcttgatttttggcaacggtttaattttaatcatttggaagtga |
30287846 |
T |
|
| Q |
299 |
gtctgtgacagcttttgtctgcggttttttcagctagttgtttagtttttccagactgtagtgatgtccctgtgactgttgtacattttatgttcaatta |
398 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30287845 |
gtctgtgacagcttttgtctgcggttttttctgctagtggtttagtttttccagactgtagtgatgtccctgtgactgttgtatattttatgttcaatta |
30287746 |
T |
|
| Q |
399 |
gttatagtttgct |
411 |
Q |
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| T |
30287745 |
gttatagtttgct |
30287733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 30293227 - 30293127
Alignment:
| Q |
20 |
catagtttttattgaaattgtaagaacaagatttcaagagtttctatgtgtaaaaaggatgattagaaaagccaagattacaaccctatacatagccact |
119 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
30293227 |
catagcttttattgaaatggtaagaacaagatttcaagagtttctaggtgt--aaaggatgattagaaaaacttagattacaaccctaacaatagccact |
30293130 |
T |
|
| Q |
120 |
aaa |
122 |
Q |
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||| |
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| T |
30293129 |
aaa |
30293127 |
T |
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