View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_low_6 (Length: 426)
Name: NF10499_low_6
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 32 - 416
Target Start/End: Original strand, 43817723 - 43818107
Alignment:
| Q |
32 |
tttcagtttgccatctttctatcaaaatgtagagtaatgtatctgttgcgagaatgggctactacagtaggagaaatataacaatgccttaatcaaatat |
131 |
Q |
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| T |
43817723 |
tttcagtttgccatctttctatcaaaatgtaaagtaatgtatttgttgcgagaatgggctactacagtaggagaaatataacaatgccttaatcaaatat |
43817822 |
T |
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| Q |
132 |
tatcaaggttccaatattatagacacttctatgagtagtgcaacaaactaggtttgtataatcttcattagtttgaaataatattatcaatggtttgttg |
231 |
Q |
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| T |
43817823 |
tatcaaggttccaatattatagacacttctatgagtagtgcaacaaactaggtttgtataatcttcattagtttgaaataatattatcaatggtttgttg |
43817922 |
T |
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| Q |
232 |
ttcttactgtttgcgtgtggttgctagtgtgtgataatacctgctgttctagtttggtgtgcacagctggagcgtgtagggggctgtttttgaggctttg |
331 |
Q |
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| T |
43817923 |
ttcttactgtttgcgtgtggttgctggtgtgtgataatacctgctgttctggtttggtgtgcacagctggagcgtgtagggggctgtttttgaggctttg |
43818022 |
T |
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| Q |
332 |
gaatgctcggctgggattagttgggatttttgtggtatgatagtgcatagaggctgttattagctaatgttctctaattcctttg |
416 |
Q |
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| T |
43818023 |
gaatgctcggctgggattagttgggatttttgtgggatgacagtgcatagaggctgttattagctaatgttctctaattcctttg |
43818107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 19873246 - 19873327
Alignment:
| Q |
272 |
ctgctgttctagtttggtgtgcacagctggagcgtgtagggggctgtttttgaggctttggaatgctcggctgggattagtt |
353 |
Q |
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| T |
19873246 |
ctgcagttctggtgtggtgcgcacaattggagtgtttagggggctgttagcgaggctttggtatgctcggctgggactagtt |
19873327 |
T |
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