View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_13 (Length: 343)
Name: NF10500_high_13
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 27755754 - 27755443
Alignment:
| Q |
19 |
cggagagggtgtataaaggactagaggtggtggcaatagcacctatggcgactatagcaagaaagcaaacagggaagcgtattgagttaggtgctaatag |
118 |
Q |
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| T |
27755754 |
cggagagggtgtataaaggactagaggtggtggcaatagcacctatggcgactatagcaaggaagcaaacagggaagcgtattgagttaggtgctaatag |
27755655 |
T |
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| Q |
119 |
caaaaccacgtcgcctcgtcgaataccaaggtggagcaaagatcgggagagggcggagacatggattttgagctggcggaaggtaagggagttgccggtt |
218 |
Q |
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| T |
27755654 |
caaaaccacgtcgcctcgtcgaataccaaggtggagcaaagagtgggagagggcggaaacatggattttgagctggcggaaggtaagggagttgccggtt |
27755555 |
T |
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| Q |
219 |
tcggcgtcagcgagggcgattgtgtcggcgacagaggaagtagattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggtt |
318 |
Q |
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| T |
27755554 |
tcggcgtcagcgagggcgatggtgtcggcgacagaggaagttgattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggtt |
27755455 |
T |
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| Q |
319 |
gtcttggtgatg |
330 |
Q |
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| T |
27755454 |
gtcttggtgatg |
27755443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 27766412 - 27766105
Alignment:
| Q |
21 |
gagagggtgtataaaggactagaggtggtggcaatagcacctatggcgactatagcaagaaagcaaacagggaagcgtattgagttaggtgctaatagca |
120 |
Q |
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| T |
27766412 |
gagacggtgtataaaggactacaggtggtggcaatagcacctatggcggcgacagcgaggaagcagacggggaaacgtatggagtttggtgcgtatagca |
27766313 |
T |
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| Q |
121 |
aaaccacgtcgcctcgtcgaataccaaggtggagcaaagatcgggagagggcggagacatggattttgagctggcggaaggtaagggagttgccggtttc |
220 |
Q |
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||| || ||||||||| || || || |||||| || ||||||||| |||||| | ||| ||||||||||||||| ||| | | ||||||| |
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| T |
27766312 |
taacgacatcgcctcgtttgattccgagactgagcaatgagcgggagaggtaggagacttccttttcgagctggcggaaggttaggaattcaccggtttg |
27766213 |
T |
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| Q |
221 |
ggcgtcagcgagggcgattgtgtcggcgacagaggaagtagattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggttgt |
320 |
Q |
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| T |
27766212 |
ggcgtcggtaagggcgatggtgtcggcggcggaggaagtggattggaagaggaatgaagttagagaaaggttctgatcagtgggaaggttgatggattgt |
27766113 |
T |
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| Q |
321 |
cttggtga |
328 |
Q |
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|||||||| |
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| T |
27766112 |
cttggtga |
27766105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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