View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_2 (Length: 504)
Name: NF10500_high_2
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 242 - 485
Target Start/End: Original strand, 50646522 - 50646771
Alignment:
| Q |
242 |
agtgccgtgttggaatagcaacaccaggttaaaagttcaatctgtagtcaaacgaaatgatattgaaaacggaacggatgaagtacttagtctttaaaca |
341 |
Q |
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| T |
50646522 |
agtgccgtgttggaatagcaacaccagtttaaaagttcaatctgtagtcaaacgaaatgatatttaaaacggaacggatgaagtacttggtcattaaaca |
50646621 |
T |
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| Q |
342 |
catttttgacatgataccactttttctgacaaaactaggatcgtattctggccaatcaagcatagaatcttgcatgaaccaacaactcacccataacact |
441 |
Q |
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| T |
50646622 |
catttttgacatgataccactttttctgacaaaactaggatcgtattctggccaatcaagcatagaatcttgcatgaaccaacaactcacccataacact |
50646721 |
T |
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| Q |
442 |
attaacaa------taataataattttttaacataaacaaaattccatta |
485 |
Q |
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| T |
50646722 |
attaacaataatagtaataataattttttaacataaacaaaattccatta |
50646771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 50646282 - 50646461
Alignment:
| Q |
1 |
tttgaaagagatgttgacgcacatatcgcataagagatataacgggaagccaggatagtgtttctagtatcagttcattggggaggacagccgcccacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |
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| T |
50646282 |
tttgaaagagatgttgacgcacatatcgcataagagatataacgggaagccaggatagtatttccagtatcagttcattggggaggacagccgcccgcaa |
50646381 |
T |
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| Q |
101 |
ctgaggtcgcttcttcatagcttcctccattgtcgctcaaattgaaccaaaacgaagaatttgtacatttatataggcgc |
180 |
Q |
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| T |
50646382 |
ctgaggtcgcttcttcatagcttcctccattgtcgctcaaattgaaccaaaacgaagaatttgtacatttatataggcgc |
50646461 |
T |
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