View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_20 (Length: 274)
Name: NF10500_high_20
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2905719 - 2905975
Alignment:
| Q |
1 |
gttttgaagaactcaagttcattttttggatggaacaactctactttttcatggcgttcaggtttgtgactacttgtgtttgttgaaatgatgatgattg |
100 |
Q |
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| T |
2905719 |
gttttgaagaacccaagttcattttttggatggaacaactctactttttcatggcgttcaggtttgtgacaacttgtgtttgttgaaatgatgatgattg |
2905818 |
T |
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| Q |
101 |
ttgcctccttctgtatttaactattcaggaggacgaggccctatttgaactagtaaaaagtatggtatcaagagattgtcttttattgcgaaatccatgc |
200 |
Q |
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| T |
2905819 |
ttgcctccttctgtatttaactactcaggaggacgaggccctatttgaactagtaaaaagtatggtatcaagagattgtcttttattgcgaaatccatgc |
2905918 |
T |
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| Q |
201 |
caggtcgtattggaaagcaatgtcgagagaggtaagca--ataatagatgttagtaa |
255 |
Q |
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| T |
2905919 |
caggtcgtattggaaagcaatgtcgagagaggtaagcaatataatagatgttagtaa |
2905975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 2900945 - 2901127
Alignment:
| Q |
75 |
tgtgtttgttgaaatgatgatg---attgttgcctccttctgtatttaactattcaggaggacgaggccctatttgaactagtaa-aaagtatggtatca |
170 |
Q |
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| T |
2900945 |
tgtgttggttgaaatgatgatggtgatttttgtctcctaccgcatttaacgattcaggaggatgaggccttgattgagctagtaagaaagtatggtttca |
2901044 |
T |
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| Q |
171 |
agagattgtcttttattgcgaaatccatgccaggtcgtattggaaagcaatgtcgagagaggtaagcaataatagatgttagt |
253 |
Q |
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| T |
2901045 |
agagatggtcttttatagcaaaatccatgccaggtcgtatcggaaagcaatgtcgtgagaggtaggcagtaatagatgttagt |
2901127 |
T |
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