View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_26 (Length: 241)
Name: NF10500_high_26
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42205278 - 42205055
Alignment:
| Q |
1 |
taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205278 |
taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc |
42205179 |
T |
|
| Q |
101 |
tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205178 |
tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga |
42205079 |
T |
|
| Q |
201 |
gatgcctccattagatgcctttct |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42205078 |
gatgcctccattagatgcctttct |
42205055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42214146 - 42213923
Alignment:
| Q |
1 |
taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214146 |
taattaatttttcaaaatcaaatatgtattgttgtcttttgactttgttatgttttttccttttgcagtaatagattcccctactctgtgaacatagctc |
42214047 |
T |
|
| Q |
101 |
tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214046 |
tttgggacgcagtgcaattcttgtttcctaatgaagttaaatcgcggaaagcagttgatgcctcaaatatatcaaaaggaataagtagacagccatctga |
42213947 |
T |
|
| Q |
201 |
gatgcctccattagatgcctttct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42213946 |
gatgcctccattagatgcctttct |
42213923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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