View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_3 (Length: 493)
Name: NF10500_high_3
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 37562469 - 37562937
Alignment:
| Q |
1 |
atagtttttaccaatcagattcaaaattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaagacactatatagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37562469 |
atagtttttaccaatcagattcaaaattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatatagg |
37562568 |
T |
|
| Q |
101 |
aacaaattgtttgatttgagcaaaatatattctcaacctctggttgacggaagagttgggtcttgaataatagaaggagaatataaaaattcacacaggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
37562569 |
aacaaattgtttgatttgagcaaaatatattctcaacctctggctgacggaagagttgggtcttgaataatagaaggaacatataaaaattcacacaggt |
37562668 |
T |
|
| Q |
201 |
taggatacaaattcacacagtgttgtgactaatttcttttggaagnnnnnnnnnnnnnnnnntatgtattcgtgcagtcaggttaagttagctgcctcag |
300 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37562669 |
tagcatacaaattcacagagtgttgtgactaatttcttttggaagaaaaaatggaaaaaaaatatgtattcgtgcagtcaggttaagttagctgcctcag |
37562768 |
T |
|
| Q |
301 |
cactcagcaaatacaaatgcagaggttagatttgtggtctaataatggcagggaagcttagattgctccaaatctgatattcacttcatatataataatg |
400 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37562769 |
cactcaacaaatacaaatggagaggttagatttgtggtctaataatggaagggaagcttagattgctccaaatctgatatccacttcatatataataatg |
37562868 |
T |
|
| Q |
401 |
aacaatcaaaaccatgatcaatgttttggattgggattaatacattgtagcaaagaaaataaaataagg |
469 |
Q |
| |
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||||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37562869 |
aacaatcaaaatcatgagcaatattttggattgggattaatacattgcagcaaagaaaataaaataagg |
37562937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 51421549 - 51421083
Alignment:
| Q |
1 |
atagtttttaccaatcagattcaaaattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaagacactatatagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51421549 |
atagtttttaccaatcagattcaaaattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatatagg |
51421450 |
T |
|
| Q |
101 |
aacaaattgtttgatttgagcaaaatatattctcaacctctggttgacggaagagttgggtcttgaataatagaaggagaatataaaaattcacacaggt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| || |
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|
| T |
51421449 |
aacaaattgtttgatttgaggaaaatatattctcaacctctggctgacggaacagttgggtcttgaataatagaaggaacatataaaaatttacacaagt |
51421350 |
T |
|
| Q |
201 |
taggatacaaattcacacagtgttgtgactaatttcttttggaagnnnnnnnnnnnnnnnnntatgtattcgtgcagtcaggttaagttagctgcctcag |
300 |
Q |
| |
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||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
51421349 |
tagcatacaaattcacacactattgtgactaatttcttttggaag----------aaaaaaatatgtattcgtgcagtcaggttaggttagttgcctcag |
51421260 |
T |
|
| Q |
301 |
cactca--gcaaatacaaatgcagaggttagatttgtggtctaataatggcagggaagcttagattgctccaaatctgatattcacttcatatataataa |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
51421259 |
cactcaacacaaatacaaatgcagaggttagatttgtggtctaataatggaagggaagcttagattgctccaaatctgatatccacttcatatataataa |
51421160 |
T |
|
| Q |
399 |
tgaacaatcaaaaccatgatcaatgttttggattgggattaatacattgtagcaaagaaaataaaataaggatgaag |
475 |
Q |
| |
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| ||||||||||||||||| |||||||| |||| |||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
51421159 |
taaacaatcaaaaccatgagaaatgttttagatttggattaatacattgcatcaaagaaaataaaataaggatgaag |
51421083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 38931488 - 38931954
Alignment:
| Q |
1 |
atagtttttaccaatcagattcaaaattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaagacactatatagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
38931488 |
atagtttttaccaatcagattcaaaattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatatagg |
38931587 |
T |
|
| Q |
101 |
aacaaattgtttgatttgagcaaaatatattctcaacctctggttgacggaagagttgggtcttgaataatagaaggagaatataaaaattcacacaggt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| || |
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|
| T |
38931588 |
aacaaattgtttgatttgaggaaaatatattctcaacctctggctgacggaacagttgggtcttgaataatagaaggaacatataaaaatttacacaagt |
38931687 |
T |
|
| Q |
201 |
taggatacaaattcacacagtgttgtgactaatttcttttggaagnnnnnnnnnnnnnnnnntatgtattcgtgcagtcaggttaagttagctgcctcag |
300 |
Q |
| |
|
||| ||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
38931688 |
tagcatacaaattcacacactattgtgattaatttcttttggaag----------aaaaaaatatgtattcgtgcagtcaggttaggttagttgcctcag |
38931777 |
T |
|
| Q |
301 |
cactca--gcaaatacaaatgcagaggttagatttgtggtctaataatggcagggaagcttagattgctccaaatctgatattcacttcatatataataa |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
38931778 |
cactcaacacaaatacaaatgcagaggttagatttgtggtctaataatggaagggaagcttagattgctccaaatctgatatccacttcatatataataa |
38931877 |
T |
|
| Q |
399 |
tgaacaatcaaaaccatgatcaatgttttggattgggattaatacattgtagcaaagaaaataaaataaggatgaag |
475 |
Q |
| |
|
| ||||||||||||||||| |||||||| |||| |||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
38931878 |
taaacaatcaaaaccatgagaaatgttttagatttggattaatacattgcatcaaagaaaataaaataaggatgaag |
38931954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 52747018 - 52747064
Alignment:
| Q |
96 |
ataggaacaaattgtttgatttgagcaaaatatattctcaacctctg |
142 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
52747018 |
ataggaacaatttgtttgatttgaggaaaagatattttcaacctctg |
52747064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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