View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_36 (Length: 211)
Name: NF10500_high_36
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 38814209 - 38814037
Alignment:
| Q |
18 |
agatcacggaaaatattaagtttgttcatattctgctacactacagtgataaagtgctgctatagtctattgctgagtttctccctcatctttttgcaaa |
117 |
Q |
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| T |
38814209 |
agatcacggaaaatattaagtttgttcatattctgctacactacagtgataaagtgctgctatagtctattgctgagtttctccctcatctttttgcaaa |
38814110 |
T |
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| Q |
118 |
aagccgctccacggttgtaaagtctctcgtcttgtgtaatggctgaagtgacagtagtcacaatgaaccccgaat |
192 |
Q |
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| T |
38814109 |
aagctgctccacggttgtaaag--tctcgtcttgtgtaatggctgaagtgacagtagtcacaatgaaccccgaat |
38814037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 39462438 - 39462284
Alignment:
| Q |
27 |
aaaatattaagtttgttcatattctgctacactacagtgataaagtgctgcta-tagtctattgctgagtttctccctcatctttttgcaaaaagccgct |
125 |
Q |
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| T |
39462438 |
aaaatatta-gtttgttcaaaacctgctacactacagtgatgaagtgctgataatagtttcttactgagtttctccctcatctttttgcagaaagcggct |
39462340 |
T |
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| Q |
126 |
ccacggttgtaaagtctctcgtcttgtgtaatggctgaagtgacagtagtcacaatgaa |
184 |
Q |
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| T |
39462339 |
cc-ccgtggtaaag--tctcgtcaaatgtattggccaaagtgacagtagtcacattgaa |
39462284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 24499293 - 24499345
Alignment:
| Q |
91 |
tgagtttctccctcatctttttgcaaaaagccgctccacggttgtaaagtctc |
143 |
Q |
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| T |
24499293 |
tgagtttctccctcatctttttgcaaaaagccgctccacggtagtaaagtctc |
24499345 |
T |
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