View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_5 (Length: 415)
Name: NF10500_high_5
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 25885322 - 25885114
Alignment:
| Q |
1 |
attaatattttcactaactaaataatatataaatattacaatgatcactgtgctaatatttttgttccattttcagtttacaatgaagaaaactatgaag |
100 |
Q |
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| T |
25885322 |
attaatattttcactaactaaataatatataaatattacaatgatcactgtgctaatatttttgttccattttcagtttacaatgaagaaaactatgaag |
25885223 |
T |
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| Q |
101 |
gaataggagctaaacctaaacatgatccccattctgctactactttaatgagtgaaggcactgtcttagaaccatccaaattgacttcaataacatgatt |
200 |
Q |
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| T |
25885222 |
gaataggagctaaacctaaacatgatccccattctgctactactttaatgagtgaaggcactgtcttagaaccatccaaattgagttcaataacatgatt |
25885123 |
T |
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| Q |
201 |
tctcaatgt |
209 |
Q |
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||||||||| |
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| T |
25885122 |
tctcaatgt |
25885114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 25884980 - 25884894
Alignment:
| Q |
314 |
tatattgcatcaagaataaattaaagaaaataatttatattggaagttgtagcttgtgttagttttcaattaagttgatgcaataat |
400 |
Q |
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| T |
25884980 |
tatattgcatcaagaataaattaaagaaaataatttatatgggaagttgtagcttgtgttagttttcaattaagttgatggaataat |
25884894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 25885131 - 25885045
Alignment:
| Q |
232 |
aacatgatttctcaatgtgtaatgaacatggctccctgtcgacattaaaaatatca-tatatgaaataaataagccatgtatttatat |
318 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
25885131 |
aacatgatttctcaatgtgtaatgaacatggct-catgtcgacattaaaaatatcattatgtgaaataaataagccatgtatttatat |
25885045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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