View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_high_9 (Length: 372)
Name: NF10500_high_9
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 38281263 - 38280911
Alignment:
| Q |
1 |
agtctacataaccacggtcttgctgagtctgaagttaagagatcatataatcttgtcggatgagaggtgtgatcaacatactccaaagtagaaaaagcat |
100 |
Q |
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| T |
38281263 |
agtctacataaccatggtcttgctgagtctgaagttaagagatcatataatcttgtcggatgagaggtgtgatcaacatactccaaagtagaagaaacat |
38281164 |
T |
|
| Q |
101 |
ctgtattagtcaaaaa--ttgcacatttgtttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttgaggttttgaat |
198 |
Q |
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|||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||| || |||||| |
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| T |
38281163 |
ctgtcttagtcaaaaaatttgtacatttgtttccttctcgaagagtgtgaccgatggaagctaaccagtcaagattgatgagatccttgaagtcttgaat |
38281064 |
T |
|
| Q |
199 |
caatgtagtatatctatgatatctaggggttagctctttaaagatttagacacaatggagaaaatccgtatagcagaaaatctcatgaaatatctagaag |
298 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38281063 |
taatgtagtatacttatgatatctaggggttagctctttaaagatttaaacacaatggagaaaatccgtgtagcagaaaatctcatgaaatatctagaag |
38280964 |
T |
|
| Q |
299 |
tacattgcaatgtacacaagtgaataaagtatctagaagtgtgtactaattaagaaagt |
357 |
Q |
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| T |
38280963 |
ta------aatgtacacaagtgaataaaatatctagaagtgtgtactaattaagaaagt |
38280911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 47403426 - 47403293
Alignment:
| Q |
155 |
gaagctagccaatcaaaattgaggagatccttgaggttttgaatcaatgtagtatatctatgatatctaggggttagctctttaaagatttagacacaat |
254 |
Q |
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| T |
47403426 |
gaagctagccagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatatagggattagttctttaaggatttgaacacaat |
47403327 |
T |
|
| Q |
255 |
ggagaaaatccgtatagcagaaaatctcatgaaa |
288 |
Q |
| |
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|||| ||||||| |||| ||||| ||| ||||| |
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| T |
47403326 |
agagagaatccgtgtagctgaaaacctcttgaaa |
47403293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 8838597 - 8838361
Alignment:
| Q |
25 |
gagtctgaagttaagagatcatataatcttgtcggatgagaggtgtgatcaacatactccaaagtagaaaaagcatctgtattagtca--aaaattgcac |
122 |
Q |
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|||||| ||| |||||||||| ||||||||| |||| | ||||||||| ||||||||| | | |||||| ||||| | || |||| | ||| || || |
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| T |
8838597 |
gagtctaaagctaagagatcagataatcttgccggaggggaggtgtgaacaacatacttcgaggtagaagaagcaccagtcttagctaggaaatctgaac |
8838498 |
T |
|
| Q |
123 |
atttgtttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttgaggttttgaatcaatgtagtatatctatgatatct |
222 |
Q |
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| |||||||||||||||||||||||| | | |||||||||||||| || ||||||||| ||||||| || |||||||||||||| ||| ||| | |||| |
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| T |
8838497 |
agttgtttccttctcgaagagtgtgatcaacggaagctagccaatgaagattgaggaggtccttgatgtcttgaatcaatgtagcatacttataaaatct |
8838398 |
T |
|
| Q |
223 |
aggggttagctctttaaagatttagacacaatggaga |
259 |
Q |
| |
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||||||||||||||||| |||| |||||||||||| |
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| T |
8838397 |
aggggttagctctttaagaatttgaacacaatggaga |
8838361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 42966586 - 42966511
Alignment:
| Q |
213 |
tatgatatctaggggttagctctttaaagatttagacacaatggagaaaatccgtatagcagaaaatctcatgaaa |
288 |
Q |
| |
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||||| ||| ||||||||||||||||| ||||| ||| |||||||| ||||||| |||||||||| ||| ||||| |
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| T |
42966586 |
tatgaaatccaggggttagctctttaaggatttgaacaaaatggagagaatccgtgtagcagaaaacctcttgaaa |
42966511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 42599469 - 42599214
Alignment:
| Q |
25 |
gagtctgaagttaagagatcatataatcttgtcggatgagaggtgtgatcaacatactccaaagtagaaaaagcatctgtattagtca-aaaat-tgcac |
122 |
Q |
| |
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|||| |||||||||||||||| |||||| ||||| | | ||||||||| ||||||||||| | |||||| ||||| | | ||||| | ||||| ||||| |
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| T |
42599469 |
gagtttgaagttaagagatcaaataatcatgtcgaaggggaggtgtgaacaacatactccgaggtagaagaagcaccgatcttagttagaaaatatgcac |
42599370 |
T |
|
| Q |
123 |
atttgtttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttgaggttttgaatcaatgtagtatatctatgatatct |
222 |
Q |
| |
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| |||||||||||| |||||||| || | | |||||||| ||| |||| ||||||||| ||||||| | ||||||||| ||| ||| ||| | |||| |
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| T |
42599369 |
aattgtttccttctagaagagtgcgaacaaaggaagctaaccagtcaagattgaggaggtccttgatatcttgaatcaacctagcatacttattaaatct |
42599270 |
T |
|
| Q |
223 |
aggggttagctctttaaagatttagacacaatggagaaaatccgtatagcagaaaa |
278 |
Q |
| |
|
||||||||||||||||| |||| ||| || ||||||||||||| ||| |||||| |
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| T |
42599269 |
aggggttagctctttaagaatttgaacataaaggagaaaatccgtgtagtagaaaa |
42599214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 6797331 - 6797513
Alignment:
| Q |
26 |
agtctgaagttaagagatcatataatcttgtcggatgagaggtgtgatcaacatactccaaagtagaaaaagcatctgtattagtca--aaaattgcaca |
123 |
Q |
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|||||||| |||||||||| |||||| || ||| |||||||||| |||||||||| |||||||| ||||| | || |||| | ||| |||||| |
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| T |
6797331 |
agtctgaatctaagagatcagataatcctggtggagcagaggtgtgaacaacatactctgaagtagaagaagcaccagtcttagctaggaaatctgcaca |
6797430 |
T |
|
| Q |
124 |
tttgtttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttgaggttttgaatcaatgtag |
206 |
Q |
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||||||||||| ||||||||||||| | || |||||| |||| | || ||||||||||||||||| |||||||||||| |||| |
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| T |
6797431 |
tttgtttccttttcgaagagtgtgatcaatagaagcttgccagttaagattgaggagatccttgatgttttgaatcaacgtag |
6797513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 9520016 - 9519947
Alignment:
| Q |
118 |
tgcacatttgtttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttg |
187 |
Q |
| |
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|||||| |||||||||||| ||| ||||||| | ||||| | |||| | |||| |||||||||||||||| |
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| T |
9520016 |
tgcacagttgtttccttcttgaaaagtgtgatcaatggaggttagctagtcaagattgaggagatccttg |
9519947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 288
Target Start/End: Complemental strand, 6328330 - 6328171
Alignment:
| Q |
129 |
ttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttgaggttttgaatcaatgtagtatatctatgatatctaggggt |
228 |
Q |
| |
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|||||||| |||||||||| | ||||||||||| || |||||||| |||||||||||| | ||||||||| |||| ||| | ||| || ||||||| |
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| T |
6328330 |
ttccttctttaagagtgtgatcaatggaagctagtcagtcaaaatttaggagatccttggcatcttgaatcaacgtagcatacttgtgaaatataggggt |
6328231 |
T |
|
| Q |
229 |
tagctctttaaagatttagacacaatggagaaaatccgtatagcagaaaatctcatgaaa |
288 |
Q |
| |
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|| |||||||| ||||| |||||||||||| ||| ||||||| |||||| ||| ||||| |
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|
| T |
6328230 |
taactctttaaggatttgaacacaatggagagaattcgtatagtagaaaacctcttgaaa |
6328171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 6378612 - 6378696
Alignment:
| Q |
126 |
tgtttccttctcgaagagtgtgaccgatggaagctagccaatcaaaattgaggagatccttgaggttttgaatcaatgtagtata |
210 |
Q |
| |
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||||||||||||||||||| || | |||||||||| || |||| |||||||| |||||| | || || |||||| |||||||| |
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|
| T |
6378612 |
tgtttccttctcgaagagtaagatcaatggaagctaacccgtcaagattgaggaaatccttaaagtcttaaatcaacgtagtata |
6378696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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