View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_1 (Length: 853)
Name: NF10500_low_1
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 518 - 830
Target Start/End: Complemental strand, 33387255 - 33386943
Alignment:
| Q |
518 |
gagcaccattgatgagacctctggttttctgatgcagatgtaagtagtgaggccatatgaacgtataatatatataaataaggcgacaaaggaccaccac |
617 |
Q |
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| T |
33387255 |
gagcaccattgatgagacctctggttttctgatgcagatgtaagtagcgaggccatatgaacgtataatatatataaataaggcgacaaaggaccaccac |
33387156 |
T |
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| Q |
618 |
gacggttggcggaggctacaaagaggagtaataagaccaacacaatcattattatgtaggaagtggtagcttacctatgtcacatactgaatgatctgac |
717 |
Q |
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| T |
33387155 |
gaaggttggcggaggctacaaagaggagtaataagaccaacacaatcattaatatgtaggaagtggtagcttacctatgtcacatactgaatgatctgac |
33387056 |
T |
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| Q |
718 |
caatctgaatatatggaataaaaccaatttttgcatcacgtacattggcccggttaaaagttttccaatgtcacgttttagtttcttttcaaaatttgtt |
817 |
Q |
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| T |
33387055 |
caatctgaatatatggaataaaaccaatttttgcatcacgtacattggcccggttaaaagttttccaatgtcacgttttagtttcttttcaaaatttgtt |
33386956 |
T |
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| Q |
818 |
tatatatgcctct |
830 |
Q |
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| T |
33386955 |
tatatatgcctct |
33386943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 33387673 - 33387481
Alignment:
| Q |
16 |
cttttatcgtacagctacacataacacatttagtttggtattgtatcccatggttatgtaaattaattaaaactggtagctagagagacaaccataaaac |
115 |
Q |
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| T |
33387673 |
cttttatcgtacagctacacatgacacatttagtttggtattgtatcccatggttatgtaaattaa----aactggtagctagagagacaaccataaaac |
33387578 |
T |
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| Q |
116 |
aattgatcgagtttacatatatttgttgcttcctgagggttcgtgattaatgtatcaatttttaatgcataatttcagttttgaatattcttccata |
212 |
Q |
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| T |
33387577 |
aattgatcgagtttacatatatttgttgcttcctgagggttcgtgattaatgtatcaatttttaatgcataatttcagttttgaatattcttacata |
33387481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 325 - 503
Target Start/End: Complemental strand, 33387476 - 33387292
Alignment:
| Q |
325 |
cagcaagtaatatcaatgttgcggctaaaagctattgcagatttttagtagttgatatcttga------tgtctcgtaagtgtcaagtatacttttcaga |
418 |
Q |
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| T |
33387476 |
cagcaagtaatatcaatgttgcggctaaaagctattgcagatttttagtagttgatagcttgaccattatgtctcgtaagtgtcaagtatacttttcaga |
33387377 |
T |
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| Q |
419 |
gtagcaacttcggaaatggtagcttgcaaaaaaggaagttatcatccacaaagataggtgactgattgaggggtttcctctactg |
503 |
Q |
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| T |
33387376 |
gtagcaacttcggaaatgatagcttgcaaaaaaggaagttatcatcctcaaagataagtgactgattgaggggtttcctctactg |
33387292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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