View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_10 (Length: 403)
Name: NF10500_low_10
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 1990314 - 1990648
Alignment:
| Q |
16 |
atttcaactaacattttggtttctagtattatcaaacaagggttttgggagaaagcacaacaaacaagcttttgaattgagagttgagactagagttttc |
115 |
Q |
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| T |
1990314 |
atttcgactaacattttggtttctagtattatcaaacaagggttttgggagaaagcacaacaaacaagcttttgaatttagagttgagactagagttttc |
1990413 |
T |
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| Q |
116 |
tttctttgataatcttactgagataacgtaaactacgccacaagaaagaagcaaatagcaggcaatgttttgaagaataacgagatcttttcgctcccca |
215 |
Q |
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| T |
1990414 |
tttctttgataatcttaccgagataacgtaaactacgccacaagaaagaagcaaatagcaggcaatgttttgaagaataacgagatcttttcgctcccca |
1990513 |
T |
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| Q |
216 |
ttatagtcagggaaagctctggtcatcactgccgcactgcnnnnnnnnnnnnccaaactcagtaagaaaccaaactacaattaatgtttatacgcatcat |
315 |
Q |
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| T |
1990514 |
ttatagtcagggaaagctctggtcatcactgccgcactgcaaaaaagaaaaaccaaactcggtaagaaaccaaactacaattaatgtttatacg---cat |
1990610 |
T |
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| Q |
316 |
catcatcattgtaaacagaaatgcgatccaattcttcg |
353 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
1990611 |
catcatcattgtaaacagaaatgtgatccaattcttcg |
1990648 |
T |
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