View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_11 (Length: 398)
Name: NF10500_low_11
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 30797903 - 30798271
Alignment:
| Q |
18 |
aatttggatccaactgaataatctctaatttacctgtgatcatttgattcagttggatactttagctggtacttcaaaatccaagcgctcagttatgatt |
117 |
Q |
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| T |
30797903 |
aatttggatccaactgaataatctctaatttacctg--atcatttgattcagttggatactttagctggtacgtcaaaatccaagtgctcggttatgatt |
30798000 |
T |
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| Q |
118 |
ttaatttggtgtgcttgtacctgaatcatttggaaggaaatgaataacatgatcttcaacaacaatgtttacccgatttctaagcttttagacaatgtca |
217 |
Q |
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| T |
30798001 |
ttaatttggtgtgcttgtacctgaatcatttggaaggaaatgaataacaggatcttcaacaacaatgtttgcccggtttctaagcttttagacaatgtca |
30798100 |
T |
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| Q |
218 |
agcacctttctttttggtggttaaaggcaactttttctaacattgcttttgactatcataattggtggctttgcctatgttgtgtctgggcattgactaa |
317 |
Q |
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| T |
30798101 |
agcacatttctttttggtggttaaaggcaactttttctaacattgcttttgactatcataattggtggctttgcttatgttgtgtctgggcattgactaa |
30798200 |
T |
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| Q |
318 |
tttctgctttcnnnnnnngttccttgtgcttttataattattctggttttgtactctagctctcttctctg |
388 |
Q |
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| T |
30798201 |
tttctgctttctttatttgttccttgtgcttttgtaattattctggttttgtactctagctctcttctctg |
30798271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 12524759 - 12524666
Alignment:
| Q |
83 |
ctggtacttcaaaatccaagcgctcagttatgattttaatttggtgtgcttgtacctgaatcatttggaaggaaatgaataacatgatcttcaa |
176 |
Q |
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| T |
12524759 |
ctggtacttcaaaatcaaaaacctcaattatgtttttgatttggtgtgcttgctcttggattattttgaaggaaatgaataacataattttcaa |
12524666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 10721711 - 10721801
Alignment:
| Q |
198 |
taagcttttagacaatgtcaagcacctttctttttggtggttaaaggcaactttttctaacattgcttttgactatcataattggtggctt |
288 |
Q |
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| T |
10721711 |
taagcttttagataatgttaagttcctttctttctggtggttaaagacaaaattcacaaaccttgcttctgactatcataggtggtggctt |
10721801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 18668285 - 18668253
Alignment:
| Q |
256 |
aacattgcttttgactatcataattggtggctt |
288 |
Q |
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| T |
18668285 |
aacattgcttttgactatcacaattggtggctt |
18668253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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