View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_12 (Length: 383)
Name: NF10500_low_12
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 50 - 366
Target Start/End: Complemental strand, 27575852 - 27575536
Alignment:
| Q |
50 |
gattcaatgaatttaattcaataatgagtgagccacctaagtcattccattctcttatagtgcaatttgtgtgtgatgtgatgccaatcagtatcgaa-a |
148 |
Q |
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| T |
27575852 |
gattcaatgaatttaattcgataatgagtgagccacctaagtcattccattctcttatagtgcaattcgtgtgtgatgtgatgccaatcagtatcgaata |
27575753 |
T |
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| Q |
149 |
atgaattttgtttaaccatctattttcttaatttgaattaaaatctactaaaaacacagtacccaaaatgtaaaaaattcaaaccgtaaatgcatgcata |
248 |
Q |
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| T |
27575752 |
aggaattttgtttaaccatctattttcttaatttgaaataaaatttactaaaaacacaatacccaaa-tgtaaaaaattcaaaccgtaaatgcatgcata |
27575654 |
T |
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| Q |
249 |
gagtatgggaggggtgccgttatcatgaactacagaagacagcgaatttgagggctaagatgttttccagattaattctatgtgattcttcttgctttct |
348 |
Q |
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| T |
27575653 |
gagtatgggaggggtgccgttatcatgaactacagaagacagcgaatttgagagctaagatgttttccagattaattctatgtgattcttcttgctttct |
27575554 |
T |
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| Q |
349 |
atccttagatgacatgat |
366 |
Q |
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| T |
27575553 |
atccttagatgacatgat |
27575536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27575919 - 27575872
Alignment:
| Q |
1 |
tattaaagacatagtagtctctgaatgtacacttctattatcaattta |
48 |
Q |
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| T |
27575919 |
tattaaagacatagtagtctctgaatgtacacttccgttatcaattta |
27575872 |
T |
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