View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10500_low_13 (Length: 382)

Name: NF10500_low_13
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10500_low_13
NF10500_low_13
[»] chr6 (6 HSPs)
chr6 (142-366)||(33446601-33446832)
chr6 (134-228)||(2722142-2722234)
chr6 (134-230)||(34175744-34175845)
chr6 (97-133)||(33446517-33446553)
chr6 (253-315)||(2722054-2722115)
chr6 (240-316)||(34175641-34175716)
[»] chr3 (16 HSPs)
chr3 (134-229)||(16928312-16928407)
chr3 (140-230)||(41300345-41300435)
chr3 (134-229)||(33849018-33849113)
chr3 (134-231)||(41424144-41424236)
chr3 (134-232)||(36823626-36823720)
chr3 (151-232)||(30991244-30991325)
chr3 (247-318)||(16928212-16928282)
chr3 (174-230)||(26510950-26511006)
chr3 (242-316)||(31916929-31917002)
chr3 (171-228)||(31901318-31901375)
chr3 (134-181)||(21593926-21593973)
chr3 (166-229)||(43192129-43192192)
chr3 (242-316)||(31901237-31901310)
chr3 (262-316)||(36823759-36823812)
chr3 (106-139)||(26510867-26510900)
chr3 (97-133)||(33848939-33848975)
[»] chr2 (3 HSPs)
chr2 (134-230)||(35747784-35747880)
chr2 (140-231)||(11907360-11907448)
chr2 (140-230)||(30518859-30518946)
[»] chr1 (7 HSPs)
chr1 (134-294)||(33077495-33077653)
chr1 (134-230)||(43945911-43946007)
chr1 (134-211)||(44371033-44371110)
chr1 (134-229)||(15650424-15650517)
chr1 (240-308)||(46728930-46728997)
chr1 (138-230)||(41693322-41693409)
chr1 (252-316)||(44370920-44370983)
[»] chr8 (5 HSPs)
chr8 (134-229)||(31432095-31432192)
chr8 (140-230)||(13547373-13547460)
chr8 (140-230)||(13677013-13677100)
chr8 (98-139)||(31432019-31432060)
chr8 (240-308)||(31432221-31432288)
[»] chr5 (3 HSPs)
chr5 (134-232)||(41471221-41471314)
chr5 (253-317)||(31185793-31185856)
chr5 (105-133)||(41471363-41471391)
[»] chr7 (2 HSPs)
chr7 (134-232)||(33097367-33097463)
chr7 (105-133)||(33097297-33097325)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 142 - 366
Target Start/End: Original strand, 33446601 - 33446832
Alignment:
Q  142 atatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgcagnnnnnnngg 241  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |       ||    
T  33446601 atatataagtataaatatttcggtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatccatttaaaattgtggtttttttgg 33446700  T
Q  242 tt-------ttgttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacacccctattaaatattagggaattt 334  Q
    ||       ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33446701 tttttggttttgttcgattttttgtttttcggttcggttaccgcggtttacattggattggatttggacatgaacacccctattaaatattagggaattg 33446800  T
Q  335 ctttttatagcgaaattggcatcaagagttat 366  Q
    ||||||||||| |||||| |||||||||||||    
T  33446801 ctttttatagcaaaattgacatcaagagttat 33446832  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 2722234 - 2722142
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaatt 228  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |  | ||||||||||||||||||||  |||||||||    
T  2722234 aataatatatatacaagtata--tatttcagtttggattggattggatcggtttatataaagggaaccgaaaaccaatccaatccgtttaaaatt 2722142  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 34175845 - 34175744
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggatt-----ggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaatt 228  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||     ||||||||||||||||  | |||| |||| |||||||||| ||||||||||    
T  34175845 aataatatatatacaaatataaatatttcggtttgaattggattggattggatcggtttatactaagggaaccaaaaatcaatccaatccatttaaaatt 34175746  T
Q  229 gc 230  Q
    ||    
T  34175745 gc 34175744  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 33446517 - 33446553
Alignment:
Q  97 gtcaatactattaaagaacaagtctagaaaatagtta 133  Q
    |||||||||||||||||||||||||||||||||||||    
T  33446517 gtcaatactattaaagaacaagtctagaaaatagtta 33446553  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 2722115 - 2722054
Alignment:
Q  253 ttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacacccct 315  Q
    |||||||| ||||||| |||||  ||||||| ||||| |||||||| ||||||||||||||||    
T  2722115 ttttggtttttcggtttggttattgcggtttgcattgaattggatt-ggacatgaacacccct 2722054  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 34175716 - 34175641
Alignment:
Q  240 ggttttgttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacaccccta 316  Q
    ||||| ||||| ||||| ||| ||||||||| |||  ||||||| | |||||||||| ||| |||||||||||||||    
T  34175716 ggtttggttcggtttttagtttttcggttcgattattgcggtttgctttggattgga-ttgaacatgaacaccccta 34175641  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 16928407 - 16928312
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattg 229  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||| |||||||||| |||||||||||    
T  16928407 aataatatatatacaagtataaatatttcggtttggattggattggatcggtttatactaagggaaccgaaaatcaatccaatccatttaaaattg 16928312  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 41300345 - 41300435
Alignment:
Q  140 atatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||  | |||||||||||||||||||| ||||||||||||    
T  41300345 atatatacaagtataaatatttcgttttggattggattggatcggtttatactaaaggaaccgaaaaccaatccaatccatttaaaattgc 41300435  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 33849018 - 33849113
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattg 229  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||   |||||||||||||||||||| |||||||||||    
T  33849018 aataatatatagacaagtataaatatttcggtttgaattggattggatcagtttatactatgtcaaccgaaaaccaatccaatccatttaaaattg 33849113  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 41424236 - 41424144
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgca 231  Q
    ||||||||||||||||||||||||||||| ||||||||||||||     ||||||||| |  | |||||||||||||||||||| |||||||||||||    
T  41424236 aataatatatatacaagtataaatatttcggtttggattggatt-----ggtttatacaaagggaaccgaaaaccaatccaatccatttaaaattgca 41424144  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 36823626 - 36823720
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattga-aaccgaaaaccaatccaatctatttaaaattgcag 232  Q
    ||||||| ||||| || ||||||||||||||||||||||||||     ||||||||||||  |  ||||||||| |||||||||||||||||||||||||    
T  36823626 aataataaatatataaatataaatatttcagtttggattggat-----cggtttatactaaggggaaccgaaaatcaatccaatctatttaaaattgcag 36823720  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 30991325 - 30991244
Alignment:
Q  151 tataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgcag 232  Q
    |||| ||||| | |||||||||||||||||||| ||||||| |    |||||||||||||||||||| ||||||||||||||    
T  30991325 tatatatattacggtttggattggattggatcgatttatacaaagagaaccgaaaaccaatccaatccatttaaaattgcag 30991244  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 16928282 - 16928212
Alignment:
Q  247 ttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacacccctatt 318  Q
    |||| ||||||||| |||||||||||||| ||||||| | |||||||||| ||||||||||||| |||||||    
T  16928282 ttcggtttttggtttttcggttcggttagtgcggtttgctttggattgga-ttggacatgaacatccctatt 16928212  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 26510950 - 26511006
Alignment:
Q  174 gattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    ||||||||||||||||||||  | ||||||||| |||||||||| ||||||||||||    
T  26510950 gattggatcggtttatactaagggaaccgaaaatcaatccaatccatttaaaattgc 26511006  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 31917002 - 31916929
Alignment:
Q  242 ttttgttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacaccccta 316  Q
    |||| |||||||||||||| |||| |||||||   ||||||| |||| ||||||| |||||||||||||||||||    
T  31917002 tttttttcgatttttggtttttcgattcggtttttgcggtttgcattagattgga-ttggacatgaacaccccta 31916929  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 31901375 - 31901318
Alignment:
Q  171 ttggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaatt 228  Q
    ||||||||||||||||||||| |    ||||||||||||||||||| |||||||||||    
T  31901375 ttggattggatcggtttatacaaagagaaccgaaaaccaatccaatttatttaaaatt 31901318  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 21593926 - 21593973
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggat 181  Q
    ||||||| |||||||||||| |||||||| |||||||||| |||||||    
T  21593926 aataataaatatacaagtattaatatttcggtttggattgaattggat 21593973  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 43192129 - 43192192
Alignment:
Q  166 ttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattg 229  Q
    ||||||| ||||| |||||||||||| |  |||| ||||||||||||||||  |||||||||||    
T  43192129 ttggatttgattgaatcggtttatacaaaagaaatcgaaaaccaatccaattcatttaaaattg 43192192  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 31901310 - 31901237
Alignment:
Q  242 ttttgttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacaccccta 316  Q
    |||| |||||||||||||| |||| || ||||   ||||||| |||| ||||||| |||||||||||||||||||    
T  31901310 tttttttcgatttttggtttttcgatttggtttttgcggtttgcattagattgga-ttggacatgaacaccccta 31901237  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 36823759 - 36823812
Alignment:
Q  262 ttcggttcggttagcgcggtttacattggattggatttggacatgaacaccccta 316  Q
    ||||||| ||||| ||||||||||||| |||||||  ||||||||||||||||||    
T  36823759 ttcggtttggttatcgcggtttacattagattgga-ctggacatgaacaccccta 36823812  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 26510867 - 26510900
Alignment:
Q  106 attaaagaacaagtctagaaaatagttaaataat 139  Q
    |||||||||||||||||||||||||||| |||||    
T  26510867 attaaagaacaagtctagaaaatagttacataat 26510900  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 33848939 - 33848975
Alignment:
Q  97 gtcaatactattaaagaacaagtctagaaaatagtta 133  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  33848939 gtcaatagtattaaagtacaagtctagaaaatagtta 33848975  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 35747880 - 35747784
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||  | |||||||||||||||||||| ||||||||||||    
T  35747880 aataatatatatgcaaatataaatatttcggtttggattggattggttcggtttatactaaaggaaccgaaaaccaatccaatccatttaaaattgc 35747784  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 11907360 - 11907448
Alignment:
Q  140 atatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgca 231  Q
    |||||||||||||||| |   || |||||||||||||||||||||||||||| ||   |||||||||||||||||||| |||||||||||||    
T  11907360 atatatacaagtataagt---tcggtttggattggattggatcggtttataccatgtgaaccgaaaaccaatccaatccatttaaaattgca 11907448  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 30518946 - 30518859
Alignment:
Q  140 atatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    |||||||||||||||| |   || |||||||||||||||||||||||||||| ||   |||||||||||||||||||| ||||||||||||    
T  30518946 atatatacaagtataagt---tcggtttggattggattggatcggtttataccatgtgaaccgaaaaccaatccaatccatttaaaattgc 30518859  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 294
Target Start/End: Original strand, 33077495 - 33077653
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgcagn 233  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||  | ||| |||||| |||| |||||||||||||||||||     
T  33077495 aataatatatatacaagtataaatattttggtttggattggatgggatcggtttatactaagggaactgaaaactaatctaatctatttaaaattgcagt 33077594  T
Q  234 nnnnnnggttttgttcgatttttggttattcggttcggttagcgcggtttacattggattg 294  Q
            |||| || | ||||||||| |||||||||||||  || |||||||||||||||    
T  33077595 tttttt--ttttttttggtttttggtttttcggttcggttattgcagtttacattggattg 33077653  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 43945911 - 43946007
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||  | |||||||||||||||||||| ||||||||||||    
T  43945911 aataatatatatacaagtataaatatttcggtttagattggattggattgatttatactaagggaaccgaaaaccaatccaatccatttaaaattgc 43946007  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 44371110 - 44371033
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaat 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||  ||||||||    
T  44371110 aataatatatatacaagtataaatatttcggtttggattggatttgatcggtttatactaaggaaaccagaaaccaat 44371033  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 15650424 - 15650517
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattg 229  Q
    ||||| |||||||||| ||||  |||||| |||||||||||||||||||| ||||||| |  | || ||||||||||||||||| |||||||||||    
T  15650424 aataacatatatacaaatata--tatttcggtttggattggattggatcgatttatacaaagggaatcgaaaaccaatccaatccatttaaaattg 15650517  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 46728997 - 46728930
Alignment:
Q  240 ggttttgttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaa 308  Q
    ||||||||||||||||||||| |||||||||||||   ||||||  ||||||||||| |||||||||||    
T  46728997 ggttttgttcgatttttggtttttcggttcggttactacggtttgtattggattgga-ttggacatgaa 46728930  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 41693409 - 41693322
Alignment:
Q  138 atatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    |||||||||||||||||| |||||     ||| || |||| ||||| ||||||||||  |||||||||||||||| |||| | ||||||||||    
T  41693409 atatatatacaagtataagtattt-----tggtttagatttgatcgatttatactatgaaaaccgaaaaccaatcaaatccacttaaaattgc 41693322  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 44370983 - 44370920
Alignment:
Q  252 tttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacaccccta 316  Q
    ||||| ||| || ||||||||||  ||||||| |||||||||||| ||| |||||||||||||||    
T  44370983 tttttagttttttggttcggttattgcggtttgcattggattgga-ttgaacatgaacaccccta 44370920  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 31432095 - 31432192
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttata--ctattgaaaccgaaaaccaatccaatctatttaaaattg 229  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||  ||||   | | |||||||||||||||| |||||||||||    
T  31432095 aataatatatatagaagtataaatatttcggtttggattggattagatcggtttatatactatgtgagctgaaaaccaatccaatccatttaaaattg 31432192  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 13547460 - 13547373
Alignment:
Q  140 atatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    |||||||||||||||| |   || |||||||||||||||||||||||||||| ||   |||||||||||||||||||| ||||||||||||    
T  13547460 atatatacaagtataagt---tcggtttggattggattggatcggtttataccatgtgaaccgaaaaccaatccaatccatttaaaattgc 13547373  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 13677013 - 13677100
Alignment:
Q  140 atatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgc 230  Q
    |||||||||||||||| |   || |||||||||||||||||||||||||||| ||   |||||||||||||||||||| ||||||||||||    
T  13677013 atatatacaagtataagt---tcggtttggattggattggatcggtttataccatgtgaaccgaaaaccaatccaatccatttaaaattgc 13677100  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 31432019 - 31432060
Alignment:
Q  98 tcaatactattaaagaacaagtctagaaaatagttaaataat 139  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  31432019 tcaatacttttaaagaacaagtctagaaaatagttacataat 31432060  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 31432221 - 31432288
Alignment:
Q  240 ggttttgttcgatttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaa 308  Q
    ||||||||| |||||||  || || ||||||||||  ||||||||||||| |||||| |||||||||||    
T  31432221 ggttttgtttgattttttattttttggttcggttactgcggtttacattgaattgga-ttggacatgaa 31432288  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 41471314 - 41471221
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgcag 232  Q
    ||||||||||||||||||||||| | ||     ||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||||||||||||||    
T  41471314 aataatatatatacaagtataaaaaatt-----tggtttggattggatcggtttatactaagggaactgaaaacctatccaatccatttaaaattgcag 41471221  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 31185856 - 31185793
Alignment:
Q  253 ttttggttattcggttcggttagcgcggtttacattggattggatttggacatgaacacccctat 317  Q
    |||||||| ||||||||| ||   || ||||||||||||||||| ||||||||||||||||||||    
T  31185856 ttttggtttttcggttcgatttttgcagtttacattggattgga-ttggacatgaacacccctat 31185793  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 41471391 - 41471363
Alignment:
Q  105 tattaaagaacaagtctagaaaatagtta 133  Q
    |||||||||||||||||||||||||||||    
T  41471391 tattaaagaacaagtctagaaaatagtta 41471363  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 33097367 - 33097463
Alignment:
Q  134 aataatatatatacaagtataaatatttcagtttggattggattggatcggtttatactattgaaaccgaaaaccaatccaatctatttaaaattgcag 232  Q
    ||||| |||||||||| ||||  |||||| |||||||||||||| |||| ||||||||    | ||| ||||||| |||||||| ||||||||||||||    
T  33097367 aataacatatatacaaatata--tatttcggtttggattggatttgatctgtttatacatagggaactgaaaacctatccaatccatttaaaattgcag 33097463  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 33097297 - 33097325
Alignment:
Q  105 tattaaagaacaagtctagaaaatagtta 133  Q
    |||||||||||||||||||||||||||||    
T  33097297 tattaaagaacaagtctagaaaatagtta 33097325  T

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