View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_14 (Length: 380)
Name: NF10500_low_14
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 204 - 369
Target Start/End: Original strand, 43893690 - 43893857
Alignment:
| Q |
204 |
tcatcatcctgcaacaaggaaatctcacatacatagaaattaaggcaaaaactagaatactcctcaccatccaccc--tttaattcaaatattcagtaca |
301 |
Q |
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| T |
43893690 |
tcatcatcctgcaacaaggaaatctcacatacatagaaattaaggtaaaaactagaatactcctcaccatccaccccctttaattcaaatattcagtaca |
43893789 |
T |
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| Q |
302 |
tcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttctt |
369 |
Q |
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| T |
43893790 |
tcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttctt |
43893857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 44303007 - 44303216
Alignment:
| Q |
16 |
cactagacacacacaagatcacaacaccaccaccatataataagtaactagaagagatacatacatctgcaacaaaccagtagcaattaattaggatata |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
44303007 |
cactagacacacacaagagcacaacaccaccaccatataataagtaactagaagagatacacacatctgcaacaaaccagtagcaactaattaggatatg |
44303106 |
T |
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| Q |
116 |
tgttccttagctccttcatttgatc---------------caatggtaggagaataagcaattaaaaagttccaacctgttagtaccaaaacaccaaaat |
200 |
Q |
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| T |
44303107 |
tgttccttaggtccttctattgatccttattgcactttttcaaaggtaggagaataagcaattaaaaagttccaacccattagtaccaaaacaccaaaat |
44303206 |
T |
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| Q |
201 |
aactcatcat |
210 |
Q |
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| T |
44303207 |
agctcatcat |
44303216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 43893347 - 43893552
Alignment:
| Q |
16 |
cactagacacacacaagatcacaacaccaccaccatataataagtaactagaagagatacatacatctgcaacaaaccagtagcaattaattaggatata |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
43893347 |
cactagacacacacaagagcacaacaccaccaccatataataagtaactagaagag----atacatctgcaacaaaccagtagccactaattaggatatg |
43893442 |
T |
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| Q |
116 |
tgttccttagctccttcatttgatc---------------caatggtaggagaataagcaattaaaaagttccaacctgttagtaccaaaacaccaaaat |
200 |
Q |
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| T |
43893443 |
tgttccttaggtccttcttttgatccttattgcactttttcaaaggtaggagaataagcaattaaaaagttccaacccattagtaccaaaacaccaaaat |
43893542 |
T |
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| Q |
201 |
aactcatcat |
210 |
Q |
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| T |
43893543 |
agctcatcat |
43893552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 223 - 370
Target Start/End: Original strand, 44294505 - 44294654
Alignment:
| Q |
223 |
aaatctcacatacatagaaattaaggcaaaaactagaatactcctcaccatccaccct--ttaattcaaatattcagtacatcaaatcaaaattatgaac |
320 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||| |||||||| || || |||||||||||||||||||||||||||| ||||||||||| |
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| T |
44294505 |
aaatctcacatacatagaaattaatgtaaaaactagaatactcttcaccatctactctccttaattcaaatattcagtacatcaaatctaaattatgaac |
44294604 |
T |
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| Q |
321 |
aactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttc |
370 |
Q |
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| |||| ||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
44294605 |
atctcacactctcatgaagactccataaagtgcacatactcagtttcttc |
44294654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 44303347 - 44303453
Alignment:
| Q |
197 |
aaataactcatcatcctgcaacaaggaaatctcacatacatagaaattaaggcaaaaactagaatactcctcaccatcca--ccctttaattcaaatatt |
294 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
44303347 |
aaatagctcatcatcctgcaacaaggaaatctca--tacatagaaattaaggcaaaaactagaatactcctcacaatccaccccctttaattcaaatatt |
44303444 |
T |
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| Q |
295 |
cagtacatc |
303 |
Q |
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|| |||||| |
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| T |
44303445 |
cactacatc |
44303453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 44304225 - 44304296
Alignment:
| Q |
299 |
acatcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44304225 |
acatcaaatcaaaattatgaacaactcatactctcatgaagacttcgtaaagtgcacatatgcagtttcttc |
44304296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 44294316 - 44294379
Alignment:
| Q |
146 |
gtaggagaataagcaattaaaaagttccaacctgttagtaccaaaacaccaaaataactcatcat |
210 |
Q |
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|||| ||||||||||||||||||| | | |||| |||||||| ||||||||||||| || ||||| |
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| T |
44294316 |
gtagtagaataagcaattaaaaagctacgacctattagtacc-aaacaccaaaatagcttatcat |
44294379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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