View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10500_low_16 (Length: 366)

Name: NF10500_low_16
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10500_low_16
NF10500_low_16
[»] chr7 (31 HSPs)
chr7 (19-318)||(45490997-45491296)
chr7 (181-285)||(38000495-38000599)
chr7 (107-286)||(41792910-41793103)
chr7 (166-285)||(38255928-38256047)
chr7 (166-285)||(38263503-38263622)
chr7 (107-286)||(15030779-15030969)
chr7 (19-107)||(15031743-15031831)
chr7 (19-107)||(109595-109683)
chr7 (23-107)||(29331442-29331526)
chr7 (23-107)||(35584203-35584287)
chr7 (19-107)||(43748343-43748431)
chr7 (215-286)||(113586-113657)
chr7 (19-107)||(7254534-7254621)
chr7 (23-107)||(26792894-26792978)
chr7 (19-107)||(33850967-33851055)
chr7 (107-176)||(26793560-26793629)
chr7 (107-239)||(7253509-7253637)
chr7 (236-286)||(29330482-29330532)
chr7 (107-175)||(38256052-38256120)
chr7 (107-175)||(38263627-38263695)
chr7 (108-175)||(29330574-29330641)
chr7 (181-239)||(35583267-35583325)
chr7 (107-175)||(110457-110525)
chr7 (107-175)||(38000393-38000461)
chr7 (247-284)||(26793669-26793706)
chr7 (166-206)||(29330529-29330569)
chr7 (107-175)||(35583359-35583427)
chr7 (19-59)||(37999575-37999615)
chr7 (19-59)||(38256657-38256697)
chr7 (19-59)||(38264232-38264272)
chr7 (252-285)||(7253474-7253507)
[»] chr1 (25 HSPs)
chr1 (19-286)||(14271235-14271491)
chr1 (107-286)||(29946501-29946680)
chr1 (107-286)||(10310868-10311061)
chr1 (107-286)||(12523894-12524087)
chr1 (107-285)||(5748027-5748219)
chr1 (107-286)||(18278285-18278474)
chr1 (107-285)||(7198208-7198400)
chr1 (21-107)||(10222384-10222470)
chr1 (189-286)||(22334026-22334123)
chr1 (19-107)||(18277420-18277508)
chr1 (24-107)||(5749050-5749133)
chr1 (166-249)||(10221454-10221537)
chr1 (169-272)||(39600054-39600157)
chr1 (23-107)||(4852251-4852335)
chr1 (19-103)||(3474410-3474494)
chr1 (202-286)||(50890883-50890967)
chr1 (19-106)||(39599117-39599204)
chr1 (203-262)||(7562792-7562851)
chr1 (107-175)||(4853127-4853194)
chr1 (184-240)||(30516545-30516601)
chr1 (166-208)||(4853199-4853241)
chr1 (107-149)||(10221568-10221610)
chr1 (19-107)||(30517526-30517614)
chr1 (237-286)||(30233093-30233142)
chr1 (202-239)||(43253010-43253047)
[»] chr6 (7 HSPs)
chr6 (107-286)||(29436683-29436862)
chr6 (107-286)||(13038678-13038857)
chr6 (122-286)||(480914-481073)
chr6 (186-286)||(34950694-34950794)
chr6 (19-107)||(13037792-13037880)
chr6 (107-177)||(34950587-34950657)
chr6 (107-168)||(18584321-18584382)
[»] chr3 (27 HSPs)
chr3 (19-286)||(30389824-30390119)
chr3 (107-286)||(44205886-44206075)
chr3 (107-286)||(3939639-3939814)
chr3 (166-286)||(41972802-41972922)
chr3 (107-286)||(48065112-48065301)
chr3 (107-285)||(49325489-49325681)
chr3 (107-286)||(47372941-47373134)
chr3 (182-286)||(21448818-21448922)
chr3 (19-107)||(41973711-41973799)
chr3 (19-107)||(47373907-47373995)
chr3 (19-107)||(48063091-48063179)
chr3 (19-107)||(21449798-21449886)
chr3 (19-107)||(44206897-44206985)
chr3 (19-107)||(49439966-49440054)
chr3 (107-177)||(16478810-16478880)
chr3 (19-107)||(8485565-8485653)
chr3 (19-107)||(16483762-16483850)
chr3 (19-107)||(49326456-49326544)
chr3 (107-177)||(21448955-21449025)
chr3 (19-87)||(21979048-21979116)
chr3 (19-87)||(22001479-22001547)
chr3 (166-239)||(8484646-8484719)
chr3 (107-170)||(41972932-41972995)
chr3 (216-265)||(9332404-9332453)
chr3 (203-239)||(22162707-22162743)
chr3 (203-239)||(21978093-21978129)
chr3 (203-239)||(22000524-22000560)
[»] chr4 (25 HSPs)
chr4 (117-286)||(53512490-53512660)
chr4 (107-286)||(52917672-52917865)
chr4 (117-282)||(47984688-47984855)
chr4 (170-279)||(51889422-51889531)
chr4 (188-286)||(38988862-38988960)
chr4 (19-107)||(52918593-52918681)
chr4 (181-286)||(40760606-40760711)
chr4 (181-272)||(4352850-4352941)
chr4 (19-106)||(40761498-40761585)
chr4 (204-286)||(45657677-45657759)
chr4 (19-107)||(38989804-38989892)
chr4 (19-107)||(40692118-40692206)
chr4 (215-286)||(13752583-13752654)
chr4 (107-177)||(55609988-55610058)
chr4 (19-87)||(45658686-45658754)
chr4 (19-107)||(55611526-55611614)
chr4 (107-177)||(13722265-13722335)
chr4 (107-239)||(40691196-40691343)
chr4 (19-107)||(44108855-44108943)
chr4 (18-107)||(47604666-47604755)
chr4 (22-79)||(47984851-47984908)
chr4 (204-272)||(53271134-53271202)
chr4 (22-79)||(53512437-53512494)
chr4 (107-175)||(38988999-38989067)
chr4 (107-175)||(40760745-40760813)
[»] chr5 (12 HSPs)
chr5 (107-286)||(1709461-1709654)
chr5 (182-286)||(24854074-24854178)
chr5 (19-107)||(24855064-24855152)
chr5 (19-106)||(5343010-5343097)
chr5 (19-107)||(6431552-6431640)
chr5 (23-107)||(31471193-31471277)
chr5 (197-284)||(31470391-31470478)
chr5 (19-107)||(32747752-32747840)
chr5 (107-167)||(24854221-24854281)
chr5 (204-262)||(27950388-27950446)
chr5 (242-279)||(5336921-5336958)
chr5 (242-286)||(41614606-41614653)
[»] chr8 (5 HSPs)
chr8 (108-286)||(24832513-24832687)
chr8 (180-286)||(15599396-15599502)
chr8 (19-107)||(24831659-24831747)
chr8 (19-91)||(10883-10955)
chr8 (181-232)||(42191053-42191104)
[»] chr2 (13 HSPs)
chr2 (181-286)||(5462541-5462646)
chr2 (204-286)||(5936014-5936096)
chr2 (203-286)||(34950377-34950460)
chr2 (19-107)||(5463523-5463611)
chr2 (107-175)||(5462680-5462748)
chr2 (19-87)||(15112505-15112573)
chr2 (210-279)||(18965226-18965295)
chr2 (189-261)||(15111532-15111605)
chr2 (204-245)||(16414812-16414853)
chr2 (107-171)||(15111651-15111715)
chr2 (196-239)||(31715685-31715728)
chr2 (204-250)||(16251972-16252018)
chr2 (19-57)||(21484384-21484422)
[»] scaffold0168 (2 HSPs)
scaffold0168 (19-107)||(16491-16579)
scaffold0168 (171-285)||(17330-17444)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 45490997 - 45491296
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatcaaccctcacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45490997 gtccatacaaaagaatcctatgttgaggtattccggatttcgttttccggaacacacatacgccctaggcaaatccggatttcgtaatcaaccctcacca 45491096  T
Q  119 tactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaacttttggccggtggtct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45491097 tactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaacttttggccggtggtct 45491196  T
Q  219 gcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacgnnnnnnngaccgacattgatagcttccccacg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||    
T  45491197 gcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacgtttttttgaccgacattgatatcttccccacg 45491296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 38000495 - 38000599
Alignment:
Q  181 tattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttc 280  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38000495 tattccggattacaccggaaacttttggccggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttc 38000594  T
Q  281 tacac 285  Q
    |||||    
T  38000595 tacac 38000599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 41792910 - 41793103
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgttt--------------ccggaatatatgtgtattccagatta 192  Q
    |||||||||||||||||||| || ||||||||||||| ||||||| || || ||||||||              |||||||||||||||||| | |||||    
T  41792910 caaccctcaccatactcaaagtcccaagtttccctttgttcaccccaatattgtatgttttcggaatatgaaatccggaatatatgtgtatttcggatta 41793009  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  41793010 caccagaaatttttggtcggtggtctgcaccacaaaaaaaacgtttttcaaacgtgttggacggtggtcaagttgaaaaacgtgtttctacacg 41793103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 38256047 - 38255928
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagt 265  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||    
T  38256047 tccggaatatatgtgtattccggattacaccagaagcttttggtcggtggtctgcaccgcaaagaaaatgtttttcaaacgttttggatggtggtcaagt 38255948  T
Q  266 tgaaaaatgtgtttctacac 285  Q
    ||||||| ||||||||||||    
T  38255947 tgaaaaacgtgtttctacac 38255928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 38263622 - 38263503
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagt 265  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||    
T  38263622 tccggaatatatgtgtattccggattacaccagaagcttttggtcggtggtctgcaccgcaaagaaaatgtttttcaaacgttttggatggtggtcaagt 38263523  T
Q  266 tgaaaaatgtgtttctacac 285  Q
    ||||||| ||||||||||||    
T  38263522 tgaaaaacgtgtttctacac 38263503  T

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Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 15030969 - 15030779
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttc--------------cggaatatatgtgtattccagatta 192  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||              |||||||||| |||||||| |||||    
T  15030969 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcatatgtttctagaatatatatttcggaatatatttgtattccggatta 15030870  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||   ||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  15030869 ca---gaagcttttggccggtggtctgcactacaaagaaaacgtttttcaaatgttttggacggtggttaagttgaaaaacgtgtttctacacg 15030779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 15031831 - 15031743
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  15031831 gtccatacaaaagaatcatatgctgaggtattccggatttcgttttccggaacacacatacgccctaggcaaatccggatttcgtaatc 15031743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 109595 - 109683
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  109595 gtccatacaaaagaatcctattctgaggtattccggatttcgttttccggaacacacatacgccctaggcaaattcggatttcgtaatc 109683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 29331526 - 29331442
Alignment:
Q  23 atacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  29331526 atacaaaagaatcctatgttgaggtattccggatttcgttttccgaaacacacatacgccctaagcaaatccggatttcgtaatc 29331442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 35584287 - 35584203
Alignment:
Q  23 atacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  35584287 atacaaaagaatcatatgctgaggtattccagatttcgttttccggaacacacatacgccctaggcaaatccggatttcataatc 35584203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 43748431 - 43748343
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| |||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||    
T  43748431 gtccatacaaaagaatcttatgctgaggtattcgggatttcgtttttcggaacacacatacgccctaggcaaatccgaatttcgtaatc 43748343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 113586 - 113657
Alignment:
Q  215 gtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  113586 gtctgcaccacaaagaaaacgtttttcaaacgtgttggacggtggtcaagttgaaaaacgtgtttctacacg 113657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 7254621 - 7254534
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||| |||||||| || |||||||||||||||    
T  7254621 gtccatacaaaagaatcatatgttgaggtattccggatttcgttttccaaaacacacatac-ccctaggcgaatccggatttcgtaatc 7254534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 26792894 - 26792978
Alignment:
Q  23 atacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||| |||| |||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||||| ||||    
T  26792894 atacaaaagaatcatatgctgaggtattccggatttcgtttttcagaacacacatacgccctaggcaaatccggatttcgcaatc 26792978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 33850967 - 33851055
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| ||||||||||| |||||  |||||| ||||||||||||||||||||||||  ||||||||||||||    
T  33850967 gtccatacaaaagaatcttatgctgaggtattccagattttgttttccagaacacacatacgccctaggcaaattcggatttcgtaatc 33851055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 26793560 - 26793629
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatata 176  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  26793560 caaccctcacgatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttccggaatata 26793629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 7253637 - 7253509
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaactttt 206  Q
    |||||||||||||||||||| || ||||||||||||| ||||||| |  ||||||||||||  |||||    || | ||| |||||||||||||||||||    
T  7253637 caaccctcaccatactcaaagtcccaagtttccctttgttcaccccagtatcgtatgtttctagaata----tgaaatccggattacaccagaaactttt 7253542  T
Q  207 ggccggtggtctgcaccataaagaaaacgtttt 239  Q
      | |||||||||||||| ||| ||||||||||    
T  7253541 acctggtggtctgcaccacaaataaaacgtttt 7253509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 29330532 - 29330482
Alignment:
Q  236 tttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  29330532 tttttcaaacattttggacggtggtcaagttgaaaaacgtgtttctacacg 29330482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 38256120 - 38256052
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  38256120 caaccctcaccatactcaaagtttcaattttccctttgttcaccccagtatcgtatgtttccggaatat 38256052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 38263695 - 38263627
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||| |  ||||||||||||||||||||    
T  38263695 caaccctcaccatactcaaagtttcaattttccctttgttcaccccagtatcgtatgtttccggaatat 38263627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 29330641 - 29330574
Alignment:
Q  108 aaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    ||||||||||||||||||| || ||||||||||||| ||||| | |  ||||||||||||||||||||    
T  29330641 aaccctcaccatactcaaagtcccaagtttccctttgttcactccagtatcgtatgtttccggaatat 29330574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 35583325 - 35583267
Alignment:
Q  181 tattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    |||||| |||||||||||||| ||||||| ||||||||| |||| ||||||||||||||    
T  35583325 tattccggattacaccagaaaattttggcgggtggtctgtaccacaaagaaaacgtttt 35583267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 110457 - 110525
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||| ||||||||||| || ||||||||||||| ||||||  |  ||||||||||||||||||||    
T  110457 caaccctctccatactcaaagtcccaagtttccctttgttcacctcagtatcgtatgtttccggaatat 110525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 38000393 - 38000461
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||| |  ||||||||||||||| ||||    
T  38000393 caaccctcaccacactcaaagtcccaagtttccctttgttcaccccagtatcgtatgtttccgggatat 38000461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 26793669 - 26793706
Alignment:
Q  247 ttttggacggtggtcaagttgaaaaatgtgtttctaca 284  Q
    |||||||||||||||||||||||||| |||||||||||    
T  26793669 ttttggacggtggtcaagttgaaaaacgtgtttctaca 26793706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 29330569 - 29330529
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaactttt 206  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  29330569 tccggaatatatgtgtatttcagattacaccataaactttt 29330529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 35583427 - 35583359
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||||||||||| || |||||||||| || |||||||||  || ||||||||  |||||||    
T  35583427 caaccctcaccatactcaaagtcccaagtttcccgttgttcaccctagtattgtatgtttttggaatat 35583359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 37999575 - 37999615
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttc 59  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  37999575 gtccatacaaaagaatcatatgctgaggtattccggatttc 37999615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 38256697 - 38256657
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttc 59  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  38256697 gtccatacaaaagaattctatgctgaggtattccggatttc 38256657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 38264272 - 38264232
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttc 59  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  38264272 gtccatacaaaagaattctatgctgaggtattccggatttc 38264232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 7253507 - 7253474
Alignment:
Q  252 gacggtggtcaagttgaaaaatgtgtttctacac 285  Q
    ||||||||||||||||||||| ||||||||||||    
T  7253507 gacggtggtcaagttgaaaaacgtgtttctacac 7253474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 14271235 - 14271491
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatcaaccctcacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  14271235 gtccatacaaaagaatcctatgttgaggtattccggatttcgttttccggaacacacatacgccctaggcaaatccggatttcgtaatcaactctcacca 14271334  T
Q  119 tactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaacttttggccggtggtct 218  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  14271335 tactcaaagtctcaagtttccctttgttcaccccaacatcgtatgttttcggaatatatgtgtattccggattaaaccagaaacttttggtcggtggtct 14271434  T
Q  219 gcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||| |||||           ||||||||||||||||||||||||||||||| |||||||||||||    
T  14271435 gcaccacaaaga-----------aaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 14271491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 29946680 - 29946501
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaactttt 206  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||  ||||    
T  29946680 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtctgtttccagaatatatgtgtattccggattacaccagaagttttt 29946581  T
Q  207 ggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  29946580 ggccggtggtctacaccacaaagaaaacgtttttcaaatgttttggacggtggtcaagttgaaaaacgtgtttctacacg 29946501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 10311061 - 10310868
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattc--------------cagatta 192  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||              | |||||    
T  10311061 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttccggaatatatgtatattctggattatacattccggatta 10310962  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10310961 caccagaagtttttggccggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 10310868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 12524087 - 12523894
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagatta-------------- 192  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||                  
T  12524087 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgttttcggaatatatgtgtatttcagattatacattccggatta 12523988  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12523987 caccagaagcttttggccggtggtctgcaccacaaagaaaacatttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 12523894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 107 - 285
Target Start/End: Complemental strand, 5748219 - 5748027
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttc--------------cggaatatatgtgtattccagatta 192  Q
    |||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||              ||||||||||||||||||| |||||    
T  5748219 caaccctcaccatactcaaagtctcaagtttccctttgttcacctcaacatcgtatgtttctggaatatatacttcggaatatatgtgtattccggatta 5748120  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacac 285  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  5748119 caccagaagcttttggccggtggtctgcaccacaaagaaaacgtttttcaaatgttttggacggtggtcaagttgaaaaacgtgtttctacac 5748027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 18278285 - 18278474
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgt----------attccagattacacc 196  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||| |            ||||| |||||||||    
T  18278285 caaccctcaccatactcaaagtctcaagttttcctttgttcaccccaacatcgtatgtttccggaatatatattgcggattatacattccggattacacc 18278384  T
Q  197 agaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  18278385 agaagcttttggccggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttttacacg 18278474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 285
Target Start/End: Complemental strand, 7198400 - 7198208
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgttt--------------ccggaatatatgtgtattccagatta 192  Q
    |||| ||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||              ||||||||||| |||||||| |||||    
T  7198400 caacactcaccatactcaaagtctcaagtttccctttgttcgccccaacatcgtatgttttcgaaatatatattccggaatatatatgtattcctgatta 7198301  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacac 285  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  7198300 caccagaaacttttggccggtggtctgcaccacaaagaaaacgtttttcaaacgttttggaccttggtcaagttgaaaaacgtgtttctacac 7198208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 10222470 - 10222384
Alignment:
Q  21 ccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  10222470 ccatacaaaagaatcctatgctgaggtattccggatttcgttttccggaacacacatacgccctaggcaaatccggatttcgtaatc 10222384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 22334123 - 22334026
Alignment:
Q  189 attacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  22334123 attacaccagaagcttttggccgatggtctgcaccacaaagaaaacgtttttataacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 22334026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 18277420 - 18277508
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18277420 gtccatacaaaagaatcctatgatgaggtattccagatttcgttttccggaacacacatacgccctaggcaaatccggagttcgtaatc 18277508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 5749133 - 5749050
Alignment:
Q  24 tacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  5749133 tacaaaagaatcttatgctgaggtattccggatttcattttccggaacacacatacgccctaggtaaatccggatttcgtaatc 5749050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 10221537 - 10221454
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttt 249  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10221537 tccggaatatatttgtattccggattacaccaaaaacttttggccggtggtctgcaccacaaagaaaacgtttttcaaacgttt 10221454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 39600054 - 39600157
Alignment:
Q  169 ggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttga 268  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||   |||||  ||||||||||||||    
T  39600054 ggaatatatgcgtattccggattacaccagaagcttttggccggtggtctgcaccacaaagaaaacgtttttcaaaacgtttgggtggtggtcaagttga 39600153  T
Q  269 aaaa 272  Q
    ||||    
T  39600154 aaaa 39600157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 4852251 - 4852335
Alignment:
Q  23 atacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||    
T  4852251 atacaaaagaatcctatgctgaggtattccggatttcgttttccgaaacacacatacgccctagacaaatccggatttcgtaatc 4852335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 3474494 - 3474410
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgt 103  Q
    ||||||||||||||||  |||||||||||||||||||||||  |||| ||||||||||||||||||||||||| || ||||||||    
T  3474494 gtccatacaaaagaattatatgttgaggtattccggatttcgatttctggaacacacatacgccctaggcaaatccagatttcgt 3474410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 50890883 - 50890967
Alignment:
Q  202 cttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||||||||||||||||||||| ||| |||| |||||||||  || |||| ||||||||||||||||||| |||||| ||||||    
T  50890883 cttttggccggtggtctgcaccacaaataaaatgtttttcaattgtgttgggcggtggtcaagttgaaaaacgtgtttttacacg 50890967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 39599117 - 39599204
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaat 106  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||| |||||| ||||  ||  |||||||||||||    
T  39599117 gtccatacaaaagaatcatatgctgaggtattccggatttcgttttccagaacacacttacgccataggtcaattcggatttcgtaat 39599204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 7562851 - 7562792
Alignment:
Q  203 ttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtca 262  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||    
T  7562851 ttttggccggtggtctgcaccacaaagaaaacgttttgcaaacattttgggcggtggtca 7562792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 4853127 - 4853194
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||||||||||| || ||||||||||||| || |||| || ||||||||||||||||||||    
T  4853127 caaccctcaccatactcaaagtcccaagtttccctttgtttaccc-aatatcgtatgtttccggaatat 4853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 30516601 - 30516545
Alignment:
Q  184 tccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgttttt 240  Q
    |||||||| || ||||| | ||||||||||||||||||||| |||||||||||||||    
T  30516601 tccagattgcatcagaatcatttggccggtggtctgcaccacaaagaaaacgttttt 30516545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 4853199 - 4853241
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaacttttgg 208  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  4853199 tccggaatatatgtgtattccggattacaccagaagcttttgg 4853241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 10221610 - 10221568
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcac 149  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  10221610 caaccctcaccatactcaaagtctcaagtttccctttgttcac 10221568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 30517614 - 30517526
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| ||| |||||||||||||  |  || ||||||||| ||||||||| |  || ||||||||| |||||    
T  30517614 gtccatacaaaagaatcatatgctgaagtattccggatttagtaatcaggaacacacttacgccctatgtgaatccggatttcataatc 30517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 30233093 - 30233142
Alignment:
Q  237 ttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||||||| ||||| | |||||||||||||||||| ||||||| |||||    
T  30233093 ttttcaaacattttgaatggtggtcaagttgaaaaacgtgtttccacacg 30233142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 43253010 - 43253047
Alignment:
Q  202 cttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  43253010 cttttggccggtggtctgcaccacaaagaaaacatttt 43253047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 29436683 - 29436862
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaactttt 206  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| || |||||    
T  29436683 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgttttcggaatatatgtgtattccggattacaccataagctttt 29436782  T
Q  207 ggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29436783 ggccggtggtctgcatcacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 29436862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 13038678 - 13038857
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaactttt 206  Q
    |||||||||||||||||||| || ||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  13038678 caaccctcaccatactcaaagtcccaagtttccctttgttcaccccagtatcgtatgtttccggaatatatgtgtattccggattacaccataaactttt 13038777  T
Q  207 ggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13038778 ggcaggtggtctgcaccataaagataacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 13038857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 480914 - 481073
Alignment:
Q  122 tcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgca 221  Q
    ||||| ||||||||||||| || ||||||| ||||||||||||||| ||| ||||     ||| | ||||||||||||| ||||||||||||||||||||    
T  480914 tcaaagtctcaagtttcccattgttcaccccaacatcgtatgtttc-ggattatac----atttcggattacaccagaagcttttggccggtggtctgca 481008  T
Q  222 ccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  481009 ccacaaagaaaacgtttttcaaacgtttttgacggtggtcaagtcgaaaaatgtgtttctacacg 481073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 34950694 - 34950794
Alignment:
Q  186 cagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacac 285  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34950694 cagattacacccgaagctttttgccggtggtcttcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacac 34950793  T
Q  286 g 286  Q
    |    
T  34950794 g 34950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 13037792 - 13037880
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  13037792 gtccatacaaaagaatcctatgctgaggtattctggatttcattttccggaacacacacacgccctaggcaaattcggatttcgtaatc 13037880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 34950587 - 34950657
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatat 177  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  34950587 caaccctcaccatactcaaagtctcaagttttcctttgttcaccccaacatcgtatgtttccggaatatat 34950657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 18584321 - 18584382
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttcc 168  Q
    ||||| |||||||||||||| || ||||||||||||| ||||||| |  |||||||||||||    
T  18584321 caaccatcaccatactcaaagtcccaagtttccctttgttcaccccagtatcgtatgtttcc 18584382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30389824 - 30390119
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatcaaccctcacca 118  Q
    |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30389824 gtccatacaaaagaatcctatgctgaggtattccggatttcgtttttcggaacacacatacgccctaggcaaatccggatttcgtaatcaaccctcacca 30389923  T
Q  119 tactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttc--------------cggaatatatgtgtattccagatta------------ 192  Q
    |||||||| |||||||||||| ||| |||| || |||||||||||||||              ||||||||||||||||||| |||||                
T  30389924 tactcaaagtctcaagtttccatttgttcatcccaacatcgtatgtttccggaatatatattccggaatatatgtgtattccggattatatattctggat 30390023  T
Q  193 --caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
      ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||    
T  30390024 tacaccataaacttttggccggtggtctgcaccacaaagaaaacgtttttcaaatgttttggacgatgatcaagttgaaaaacgtgtttctacacg 30390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 44206075 - 44205886
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtg----------tattccagattacacc 196  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||| |           ||||||||||||||||    
T  44206075 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgttttcggaatatatattccggattatatattccagattacacc 44205976  T
Q  197 agaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44205975 agaaacttttggccggtggtatgcactacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 44205886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 3939814 - 3939639
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaactttt 206  Q
    |||||||||||||||||||| || |||||||||| || ||||||| |  |||||||||||||||| |||||    |||||  ||||||||||||||||||    
T  3939814 caaccctcaccatactcaaagtcccaagtttcccgttgttcaccccagtatcgtatgtttccggattatat----attccgaattacaccagaaactttt 3939719  T
Q  207 ggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3939718 ggtcggtggtctgcaccacaaagaaaacgtttttcaaacgttttagacggtggtcaagttgaaaaatgtgtttctacacg 3939639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 41972922 - 41972802
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagt 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41972922 tccggaatatatgtgtattccggattacaccagaaacttttggtcggtggtatgcaccacaaagaaaacatttttcaaacgttttggacggtggtcaagt 41972823  T
Q  266 tgaaaaatgtgtttctacacg 286  Q
    ||||||| |||||||||||||    
T  41972822 tgaaaaacgtgtttctacacg 41972802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 48065112 - 48065301
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgt----------attccagattacacc 196  Q
    |||||||||||||||||||| |||||||||||||||  ||| ||| ||||||||||||||||||||||||| |            ||| | |||||||||    
T  48065112 caaccctcaccatactcaaagtctcaagtttcccttggttcgccccaacatcgtatgtttccggaatatatattccggattatacatttcggattacacc 48065211  T
Q  197 agaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  48065212 agaagcttttggctggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaagcgtgtttctacacg 48065301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 285
Target Start/End: Complemental strand, 49325681 - 49325489
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatat--------------gtgtattccagatta 192  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||  ||||||| || |||||||              ||||||||| |||||    
T  49325681 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatgatatgttttcgaaatatatattctgaaatatatgtgtattccggatta 49325582  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacac 285  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  49325581 caccagaagcttttggtcggtggtctgcaccacaaagaaaacgtttttcaaacgtttttgacggtggtcaagttgaaaaacgtgtttttacac 49325489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 47373134 - 47372941
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattcc--------------agatta 192  Q
    |||||||||||||||||||| || |||||||||| || ||||||| |  ||||||||||||||||||| |  ||||||||              ||||||    
T  47373134 caaccctcaccatactcaaagtcccaagtttcccgttgttcaccccagtatcgtatgtttccggaatacacatgtattccggattatatatttcagatta 47373035  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  47373034 cactagaaacttttggccagtggtctgcaccacaaagaaaacgtttttcaaacgttttgggcggtggtcaagttgaaaaacgtgtttttacacg 47372941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 21448922 - 21448818
Alignment:
Q  182 attccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttct 281  Q
    ||||| ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  21448922 attccggattacaccagaagcttttgtccggtggtctgtaccacaaagaaaacgtttttcaaaagttttggacgatggtcaagttgaaaaacgtgtttct 21448823  T
Q  282 acacg 286  Q
    |||||    
T  21448822 acacg 21448818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 41973799 - 41973711
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  41973799 gtccatacaaaagaatcttatgttgaggtatttcagatttcgttttccggaacacacatacgccctaggcaaatccggatttcgtaatc 41973711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 47373995 - 47373907
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  47373995 gtccatacaaaagaatcctatgctgacgtattccggatttcgatttccggaacacacatacgccctaggcaaatccggatttcgtaatc 47373907  T

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Target: chr3; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 48063091 - 48063179
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  48063091 gtccatacaaaagaatcctatgctgaggtattctggatttcgttttctggaacacacatacgccctaggcaaatccggatttcgtaatc 48063179  T

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Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 21449886 - 21449798
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||  || |||||||||||    
T  21449886 gtccatacaaaagaatcatatgctgaggtattccggatttcgttttccagaacacacatacgccctaggcaaattcgaatttcgtaatc 21449798  T

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Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 44206985 - 44206897
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||| |||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||    
T  44206985 gtccataaaaaagaatcctatgatgaggtattctggatttcgtttttcggaacacacatacgccctaggcaaatccggattttgtaatc 44206897  T

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Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 49440054 - 49439966
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||||||| |||||    
T  49440054 gtccatataaaagaatcctatgctgaggtattccagatttcgttttccggaacacacatacgccctaggcaaatctggatttcctaatc 49439966  T

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Target: chr3; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 16478810 - 16478880
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatat 177  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16478810 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttccggaatatat 16478880  T

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Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 8485653 - 8485565
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||  |||| | |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||||||||||    
T  8485653 gtccatacaaaagaattatatgctaaggtattccggatttcgttttccggaacacacatacgccctagacaattccggatttcgtaatc 8485565  T

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Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 16483762 - 16483850
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||| |||||||||||  || |||||||||||||||    
T  16483762 gtccatacaaaagaatcctatgctgaggtattctggatttcgttttctggaacacacttacgccctaggtcaatccggatttcgtaatc 16483850  T

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Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 49326544 - 49326456
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||  |||||||| ||||||    
T  49326544 gtccatacaaaagaatcctatgctgaggtattctagatttcgttttccagaacacacatacgccctaggcaagtccggatttggtaatc 49326456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 21449025 - 21448955
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatat 177  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  21449025 caaccttcaccatactcaaagtctcaagtttccctttgttcaccccatcatcgtatgtttccggaatatat 21448955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 21979116 - 21979048
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctagg 87  Q
    ||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||| |||||| ||||    
T  21979116 gtccatacaaaagaatcatatgctgaggtattccggattttgttttccggaacacacttacgccttagg 21979048  T

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Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 22001547 - 22001479
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctagg 87  Q
    ||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||| |||||| ||||    
T  22001547 gtccatacaaaagaatcatatgctgaggtattccggattttgttttccggaacacacttacgccttagg 22001479  T

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Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 8484719 - 8484646
Alignment:
Q  166 tccggaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    |||| |||||||| ||||||| |||||||| | || ||||||||||||||||||||||| ||||||||| ||||    
T  8484719 tccgaaatatatgcgtattccggattacactaaaagcttttggccggtggtctgcaccacaaagaaaacatttt 8484646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 41972995 - 41972932
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccgg 170  Q
    |||||||||||||||||||| || ||||||||| ||| ||||||| |  |||||||||||||||    
T  41972995 caaccctcaccatactcaaagtcccaagtttccatttgttcaccccagtatcgtatgtttccgg 41972932  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 9332404 - 9332453
Alignment:
Q  216 tctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagt 265  Q
    ||||||||| | ||||||||| |||||||||||||||||||| |||||||    
T  9332404 tctgcaccacatagaaaacgtgtttcaaacgttttggacggtcgtcaagt 9332453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 22162743 - 22162707
Alignment:
Q  203 ttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22162743 ttttggccggtggtctgcaccacaaagaaaacgtttt 22162707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 21978129 - 21978093
Alignment:
Q  203 ttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  21978129 ttttggccagtggtctgcaccacaaagaaaacgtttt 21978093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 22000560 - 22000524
Alignment:
Q  203 ttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  22000560 ttttggccagtggtctgcaccacaaagaaaacgtttt 22000524  T

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Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 117 - 286
Target Start/End: Original strand, 53512490 - 53512660
Alignment:
Q  117 catactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaacttttggccggtggt 216  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||    
T  53512490 catactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttccggaatatatgtgtattccggattacaccagaaacttttggtcagtggt 53512589  T
Q  217 ctgcaccataaagaaaacg-tttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53512590 ctgcaccacaaagaaaacgttttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 53512660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 52917865 - 52917672
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattaca------------ 194  Q
    ||||||||||||| |||||| ||  |||||||||||| || ||||||  |||||||||||||||||||||||||||||| |||||| |                
T  52917865 caaccctcaccatgctcaaagtcctaagtttccctttgtttaccctagtatcgtatgtttccggaatatatgtgtattctagattatatattatggatta 52917766  T
Q  195 --ccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
      |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  52917765 acccagaaacttttggtcggtggtctgcaccacaaagaaaacgtttttcaaacgctttggacggtggtcaagttgaaaaacgtgtttctacacg 52917672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 47984855 - 47984688
Alignment:
Q  117 catactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaa------acttttggcc 210  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    ||||| || || |   | |      ||||||||||    
T  47984855 catactcaaattctcaagtttccctttgttcaccccaacatcgtatgtttccggaatatat----attccggaatatatgtgtattccgaacttttggcc 47984760  T
Q  211 ggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttcta 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47984759 ggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttcta 47984688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 51889422 - 51889531
Alignment:
Q  170 gaatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaa 269  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||    
T  51889422 gaatatatgtgtattccggattacactagaaacttttggccggtggtctgcaccacaaagaaaacgtttttcaaacattttgtgcggtggtcaagttgaa 51889521  T
Q  270 aaatgtgttt 279  Q
    ||| ||||||    
T  51889522 aaacgtgttt 51889531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 38988960 - 38988862
Alignment:
Q  188 gattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38988960 gattacacaagaaacttttggccggtggtttgcaccacaatgaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 38988862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 52918681 - 52918593
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  52918681 gtccatacaaaagaatcctatgctgaggtattccggatttcattttccggaacacacatacgccctaggcaaatccagatttcgtaatc 52918593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 40760711 - 40760606
Alignment:
Q  181 tattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttc 280  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||| ||||||     
T  40760711 tattccggattacaccagaagcttttggccggtggtctgcaccacaaagaaaacgtttttcaaacgttttgggcagtggtcaaattgaaaaacgtgtttt 40760612  T
Q  281 tacacg 286  Q
    ||||||    
T  40760611 tacacg 40760606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 4352850 - 4352941
Alignment:
Q  181 tattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaa 272  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||    
T  4352850 tattccggattacaccagaagcttttggtcggtggtctgcaccacaaagaaaacgtttttcaaacgttttgggcagtggtcaagttgaaaaa 4352941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 40761585 - 40761498
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaat 106  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||    
T  40761585 gtccgtacaaaagaatcctatgctgaggtattccggatttcgttttccagaacacacatacgccctaggcaaatccggatttcgtaat 40761498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 45657759 - 45657677
Alignment:
Q  204 tttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  45657759 tttggtcggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttaaaaaacgtgtttctacacg 45657677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 38989892 - 38989804
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||| ||| | |||||||||||||    
T  38989892 gtccatacaaaagaatcctatgctgaggtattccggattttgttttccggaacacacatacgccctaggaaaatctggatttcgtaatc 38989804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 40692206 - 40692118
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||  || |||||||||||||||    
T  40692206 gtccatacaaaagaatcctatgctgaggtattccgaatttcgttttccggaacacacttacgccctaggtcaatccggatttcgtaatc 40692118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 13752583 - 13752654
Alignment:
Q  215 gtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  13752583 gtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttggaaaacgtgtttctacacg 13752654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 55610058 - 55609988
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatat 177  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  55610058 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttccggaatatat 55609988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 45658754 - 45658686
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctagg 87  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  45658754 gtccatacaaaagaatcctatgttgaggtattccagatttcgttttccggaacacacttacgccctagg 45658686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 55611614 - 55611526
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||| |||||||||||  || |||||||||||||||    
T  55611614 gtccatacaaaagaatcctatgctgaggtattctggatttcgttttctggaacacacttacgccctaggtcaatccggatttcgtaatc 55611526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 13722265 - 13722335
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatat 177  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  13722265 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttctggaatatat 13722335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 40691343 - 40691196
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccct-aacatcgtatgtttccggaatatat--------------gtgtattccagatt 191  Q
    |||||||||| ||||||||| |||||||||||||||| |||||||  ||||||||||||||| |||||||||              ||||||||  ||||    
T  40691343 caaccctcacaatactcaaagtctcaagtttccctttgttcacccccaacatcgtatgtttctggaatatatattacgaaatatatgtgtattctggatt 40691244  T
Q  192 acaccagaaacttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||||    
T  40691243 acaccagaagattttggccggtggtctgcaccacaaagaaaacgtttt 40691196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 44108855 - 44108943
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| | ||||||||| |||||| ||||||||||| |||||||||||||||||||  |||||||| |||||    
T  44108855 gtccatacaaaagaatcatatgctaaggtattcctgatttcgttttccggaacccacatacgccctaggcaaattcggatttcataatc 44108943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 47604666 - 47604755
Alignment:
Q  18 agtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||||||||| | |||||||||| ||||  |||||| |||||||| |||||||||||  || |||||||||||||||    
T  47604666 agtccatacaaaagaatcctatgctaaggtattccgaattttgttttccagaacacacttacgccctaggtcaatccggatttcgtaatc 47604755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 47984908 - 47984851
Alignment:
Q  22 catacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatac 79  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  47984908 catacaaaagaatcctatgctgaggtattccagatttcgttttccggaacacacatac 47984851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 53271134 - 53271202
Alignment:
Q  204 tttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaa 272  Q
    |||||| ||||||||||| || |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  53271134 tttggctggtggtctgcatcacaaagaaaacgattttcaaccgttttgggcggtggtcaagttgaaaaa 53271202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 53512437 - 53512494
Alignment:
Q  22 catacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatac 79  Q
    ||||||||||||||||||| ||||||||| || ||||| |||||||||||||||||||    
T  53512437 catacaaaagaatcctatgctgaggtatttcgaatttcgttttccggaacacacatac 53512494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 38989067 - 38988999
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||||||||||| | ||||||||||||||  |||||| |  |||||||||||| |||||||    
T  38989067 caaccctcaccatactcaaagtttcaagtttccctttgctcaccccagtatcgtatgtttctggaatat 38988999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 40760813 - 40760745
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||  |  ||||||||||||||||||||    
T  40760813 caaccttcaccatactcaaattcccaagattccctttgttcacctcagtatcgtatgtttccggaatat 40760745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 1709654 - 1709461
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattcc--------------agatta 192  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||              ||||||    
T  1709654 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccaacatcgtatgtttccggaatatatgtgtattccggattatacattccagatta 1709555  T
Q  193 caccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||||||    
T  1709554 caccagaagcttttggtcggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacgacggttaagttgaaaaacgtgtttctacacg 1709461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 24854178 - 24854074
Alignment:
Q  182 attccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttct 281  Q
    |||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  24854178 attccagagtacaccagaagcttttggccggtgttctgcaccacaaagaaaacgtttttcaaacgttttgggcggtggtcaagttgaaaaacgtgtttct 24854079  T
Q  282 acacg 286  Q
    |||||    
T  24854078 acacg 24854074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 24855152 - 24855064
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  24855152 gtccatacaaaagaatcctatgctgaggtattccgtatttcgttttccggaacacacatacgccctaggaaaatccgaatttcgtaatc 24855064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 5343097 - 5343010
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaat 106  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||    
T  5343097 gtccatacaaaagaatcatatgctgaggtattccggatttcgtttttcggaacacacatacgccctaggcaaatccggatttcttaat 5343010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 6431640 - 6431552
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||| ||||||||||||| ||||||||||| ||||||  |||||| ||||||||||||||||||||||| || ||||||||||||    
T  6431640 gtccatacgaaagaatcctatgctgaggtattccagatttcgatttccgaaacacacatacgccctaggcaaatccagatttcgtaatc 6431552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 31471277 - 31471193
Alignment:
Q  23 atacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||||  || |||||||||||||||    
T  31471277 atacaaaagaatcctatgttgaggtattccggatgtcgttttccggaatacacttacgccctaggtgaatccggatttcgtaatc 31471193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 31470478 - 31470391
Alignment:
Q  197 agaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctaca 284  Q
    |||| |||| || ||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  31470478 agaagctttgggtcggtggtctgcaccacaaagaaaacatttttcaaactttttcgacggtggtcaagttgaaaaacgtgtttctaca 31470391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 32747752 - 32747840
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| ||||||||||||||||||  ||||| ||||||||||||| | |||||||| ||| |||||||||||    
T  32747752 gtccatacaaaagaatcatatgctgaggtattccggatttcgatttccagaacacacatacgtcgtaggcaaatccgaatttcgtaatc 32747840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 24854281 - 24854221
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttc 167  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||    
T  24854281 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccagcatcgtatgtttc 24854221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 27950388 - 27950446
Alignment:
Q  204 tttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtca 262  Q
    ||||| ||||||||||||||| | |||||||||||||||||||| |||| |||||||||    
T  27950388 tttggacggtggtctgcaccacatagaaaacgtttttcaaacgtcttgggcggtggtca 27950446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 5336958 - 5336921
Alignment:
Q  242 aaacgttttggacggtggtcaagttgaaaaatgtgttt 279  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  5336958 aaacgttttgggcggtggtcaagttgaaaaacgtgttt 5336921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 41614653 - 41614606
Alignment:
Q  242 aaacgttttggacggtggtcaagttg---aaaaatgtgtttctacacg 286  Q
    ||||||||||||||||||||||||||   ||||||||||||| |||||    
T  41614653 aaacgttttggacggtggtcaagttggaaaaaaatgtgtttccacacg 41614606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 286
Target Start/End: Original strand, 24832513 - 24832687
Alignment:
Q  108 aaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatatatgtgtattccagattacaccagaaacttttg 207  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||| |  |||||||||||| ||| ||||     ||||   |||||||||||| ||||||    
T  24832513 aaccctcaccatactcaaagtcccaagtctccctttgttcaccccagtatcgtatgtttcgggattatac----attctgaattacaccagaagcttttg 24832608  T
Q  208 gccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    | ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||    
T  24832609 ggcggtggtctgcaccacaaagaaaacgtttttcaaacattttggacggtggttaagttgaaaaccgtgtttctacacg 24832687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 15599502 - 15599396
Alignment:
Q  180 gtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgttt 279  Q
    ||||||| || | ||||||||  |||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15599502 gtattccggactgcaccagaagattttggtcggtggtttgtaccacaaagaaaacgtttttcaaacgttttggacggtggttaagttgaaaaacgtgttt 15599403  T
Q  280 ctacacg 286  Q
    |||||||    
T  15599402 ctacacg 15599396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 24831659 - 24831747
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||| |||||||||| | |||||||||||||||    
T  24831659 gtccatacaaaagaatcttatgctgaggtattccggatttcgttttccggaacacagataagccctaggcatatccggatttcgtaatc 24831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 10955 - 10883
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaa 91  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10955 gtccatacaaaagaatccaatgctgaggtattccggatttcgttttccggaacacacatacgccataggcaaa 10883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 42191053 - 42191104
Alignment:
Q  181 tattccagattacaccagaaacttttggccggtggtctgcaccataaagaaa 232  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||| |||||||    
T  42191053 tattccggattacaacagaaacttttggccggtggtctgcgccacaaagaaa 42191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 5462646 - 5462541
Alignment:
Q  181 tattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttc 280  Q
    |||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  5462646 tatttcagattacaccaaaaacttttggtcggtggtctgcaccacaaagaaaacgtttttcaaacattttggacggtggtcaagttgaaaaacgtgtttc 5462547  T
Q  281 tacacg 286  Q
     |||||    
T  5462546 cacacg 5462541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 5936096 - 5936014
Alignment:
Q  204 tttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5936096 tttgaccggtggtctgcaccacaaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaacgtgtttctacacg 5936014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 34950377 - 34950460
Alignment:
Q  203 ttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgtttctacacg 286  Q
    ||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  34950377 ttttggccgatggtctgcaccacaaagaaaacgttttccaaatgttttggacggtggtcaagttgaaaaatgtgtttctacacg 34950460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 5463611 - 5463523
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||| || ||||||||||||    
T  5463611 gtccatacaaaagaatcatatgttgaggtattccgaatttcgttttccagaacacacatacgtcctaggcaaatccagatttcgtaatc 5463523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 5462748 - 5462680
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccggaatat 175  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |  ||||||||||||||||||||    
T  5462748 caaccctcaccatactcaaagtctcaagtttccctttgttcaccccagtatcgtatgtttccggaatat 5462680  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 15112573 - 15112505
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctagg 87  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||| |||||||||||    
T  15112573 gtccatacaaaagaatcctatgttgaggtattccgaatttcgtttttcggatcacacgtacgccctagg 15112505  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 18965226 - 18965295
Alignment:
Q  210 cggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaaaatgtgttt 279  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||  ||||| ||||||    
T  18965226 cggtggtctgcaccacatagaacacgtttttcaaacgttttggacggtggtcaagtcaaaaaacgtgttt 18965295  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 15111605 - 15111532
Alignment:
Q  189 attacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgtttt-ggacggtggtc 261  Q
    ||||||||||||  |||||||||||||||| ||||| |||||||| |||| ||||||||||| |||||||||||    
T  15111605 attacaccagaagattttggccggtggtctacaccacaaagaaaatgtttctcaaacgttttcggacggtggtc 15111532  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 16414812 - 16414853
Alignment:
Q  204 tttggccggtggtctgcaccataaagaaaacgtttttcaaac 245  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16414812 tttggccggtggtctgcaccataaagaaaacgtttttcaaac 16414853  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 15111715 - 15111651
Alignment:
Q  107 caaccctcaccatactcaaattctcaagtttccctttcttcaccctaacatcgtatgtttccgga 171  Q
    ||||||||||||||| |||| || ||||||||||||| ||||||| |  ||||||||||||||||    
T  15111715 caaccctcaccatacacaaagtcccaagtttccctttgttcaccccagtatcgtatgtttccgga 15111651  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 31715728 - 31715685
Alignment:
Q  196 cagaaacttttggccggtggtctgcaccataaagaaaacgtttt 239  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||    
T  31715728 cagaagcttttggccggtggtctgcaccacatagaaaacgtttt 31715685  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 16252018 - 16251972
Alignment:
Q  204 tttggccggtggtctgcaccataaagaaaacgtttttcaaacgtttt 250  Q
    |||||||||||||||| |||| ||||||||| |||||||||| ||||    
T  16252018 tttggccggtggtctgtaccacaaagaaaacatttttcaaacatttt 16251972  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 21484422 - 21484384
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatt 57  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  21484422 gtccatacaaaagaatcctatgttgagggatttcggatt 21484384  T

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Target: scaffold0168 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 16491 - 16579
Alignment:
Q  19 gtccatacaaaagaatcctatgttgaggtattccggatttcattttccggaacacacatacgccctaggcaaacccggatttcgtaatc 107  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||  || |||||||||||    
T  16491 gtccatacaaaagaatcctatgctgaggtattccggatttcgttttccgaaacacacatacgccctaggcaaattcgaatttcgtaatc 16579  T

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Target: scaffold0168; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 17330 - 17444
Alignment:
Q  171 aatatatgtgtattccagattacaccagaaacttttggccggtggtctgcaccataaagaaaacgtttttcaaacgttttggacggtggtcaagttgaaa 270  Q
    |||||||||||||||  |||||||| ||||  |||||||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  17330 aatatatgtgtattctggattacacgagaagattttggccagtggtctgtaccacaaagaaaacgtttttcaaacgttttgaccggtggtcaagttgaaa 17429  T
Q  271 aatgtgtttctacac 285  Q
    || | |||| |||||    
T  17430 aacgcgtttttacac 17444  T

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