View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_18 (Length: 353)
Name: NF10500_low_18
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 39612725 - 39612398
Alignment:
| Q |
7 |
gtaatgccgtaaggctttggcttattagttagccagcattcagattcgttgcataaataaattggggtcatggctatgattataatcgctatacttccta |
106 |
Q |
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| T |
39612725 |
gtaatgccgtaaggctttggcttattagttagccatcattaagattcgttgcataaataaattggggtcatggttatgattataatcactatacttccta |
39612626 |
T |
|
| Q |
107 |
ttctatatgtttcattgttcccttttaatgacatgcatgtgatacattattagattgaagcattacctaccttgctaagaaattagtgatgttggatttg |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612625 |
ttctat---------tgttcccttttaatgacatgcatgtgatacattattagattgaagcattacctaccttgctaagaaattagtgatgttggatttg |
39612535 |
T |
|
| Q |
207 |
aattaaaaattaaatttggtgtgtcttgagtagaatgtgactctactttttcattgttgttgatgtaaaagtatagaatctatctgctttccttgacatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39612534 |
aattaaaaattaaatttggtgtgtcttgagtagaatgtgactctactttttcattgttgttgatgtaaaagtatagaatctctctgctttccttgacatg |
39612435 |
T |
|
| Q |
307 |
gttttggataccatttgtctgtctttttagtcctatg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39612434 |
gttttggataccatttgtctgtctttttagtcctatg |
39612398 |
T |
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