View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_2 (Length: 663)
Name: NF10500_low_2
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 44 - 353
Target Start/End: Original strand, 9165886 - 9166196
Alignment:
| Q |
44 |
atcaacggtatagtcaagctaattagttgt-ctacaaaatcagcacattgtacttagatgctataactcacgggttatccttatccaagctctactcaag |
142 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9165886 |
atcaacggtatagtcaagctaattagttgtgctacgaaatcagcacattgtacttagatgctataactcacgggttatccttatccaagctctactcaag |
9165985 |
T |
|
| Q |
143 |
tcttgcgagcttgtcggtctttcacttttaacagatttttgtgttagacaacttttaaacaatgtgttctcagattgtcctattagcagttttataatgt |
242 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
9165986 |
tcttgcgagcttatcggtctttcacttttaacagatttttgtgttagataacttttaaacaatatgttctcagattgtcctattagcagttttatgatgt |
9166085 |
T |
|
| Q |
243 |
atatggtnnnnnnnttgttccctgtatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactc |
342 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166086 |
atatggtaaaaaaattgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactc |
9166185 |
T |
|
| Q |
343 |
acccttttcaa |
353 |
Q |
| |
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||||||||||| |
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| T |
9166186 |
acccttttcaa |
9166196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 377 - 652
Target Start/End: Original strand, 9166226 - 9166513
Alignment:
| Q |
377 |
aggtcccctccccttggaccttcatcgtcatcatagccacnnnnnnnattcagtccatgtctgttcttcttatctacttcctcatcttcatcttcctctc |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9166226 |
aggtcccctccccttggaccttcatcgtcatcatagccactttttttattcagtccatgtctattcttcttatctacttcctcatcttcatcttcctctc |
9166325 |
T |
|
| Q |
477 |
ctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc |
564 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166326 |
ctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc |
9166425 |
T |
|
| Q |
565 |
accaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttctct |
652 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166426 |
accaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttctct |
9166513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 435 - 652
Target Start/End: Original strand, 9154867 - 9155096
Alignment:
| Q |
435 |
gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctccc |
522 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
9154867 |
gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc |
9154966 |
T |
|
| Q |
523 |
accacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatca |
622 |
Q |
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||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9154967 |
accccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatca |
9155066 |
T |
|
| Q |
623 |
gcagtctttttcctattattcatcttctct |
652 |
Q |
| |
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||||| ||||||||||| |||||||||||| |
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|
| T |
9155067 |
gcagtttttttcctatttttcatcttctct |
9155096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 9154705 - 9154791
Alignment:
| Q |
271 |
aaactaaccaaaagtaaattggtaaccttcaacatggattcat----aaatataaaacaaacaaggcaagatactcacccttttcaa |
353 |
Q |
| |
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|||||||| | ||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
9154705 |
aaactaactagaagtaaactgataaccttcaacatggattcatgaaaaaatataaaacaaacaaggcaaaatactcacccttttcaa |
9154791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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