View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_21 (Length: 337)
Name: NF10500_low_21
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 47 - 322
Target Start/End: Original strand, 10290544 - 10290815
Alignment:
| Q |
47 |
attggtattgaaccaaaccaatgaaaagcaa-ttgagctcacttgagtttgatttggtgttagtttaagacattgaaatttgttgttataaggtttcaag |
145 |
Q |
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| T |
10290544 |
attggtattgaaccaaaccaatgaaaaagaagttgagctcacttgagtttgatttggtgttagtttaagacattaaaatttg--gttataaggtttcaag |
10290641 |
T |
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| Q |
146 |
tacgatccgatccgcacaatgtcaattttagtaggttaagcttactttaaaaannnnnnnnnnnntaataagaagttggagat-----tttaaaatcgaa |
240 |
Q |
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| T |
10290642 |
ta-----cgatccgcacaatgtcaattttagtaggttaagcttactttaaaaa---aaaaaataataataagaagttggagatcatgatttaaaatcgaa |
10290733 |
T |
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| Q |
241 |
taaaggagaaaaactaatatcagcatttgtgatttgacggnnnnnnnnggtaatagatcttttctagtattgttgatggtgt |
322 |
Q |
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| T |
10290734 |
taaaggataaaaactaatactaacatttgtgatttgacgggaaaaaaaggtaatagatcttttctagtatttttgatggtgt |
10290815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 10289499 - 10289535
Alignment:
| Q |
18 |
ttttattcatggggttgtgttcaattggtattggtat |
54 |
Q |
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| T |
10289499 |
ttttattcatggggttgtgttcaattggtattggtat |
10289535 |
T |
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