View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_22 (Length: 334)
Name: NF10500_low_22
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 45209784 - 45209465
Alignment:
| Q |
7 |
ttgatgattttgaattgggtggtttttctggtttgtttgtttacacactggcattctgcagtgtccataaaatttgtttgctttttcatgtgtagagata |
106 |
Q |
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| T |
45209784 |
ttgatgattttgaattgggtggtttttctggtttgtttgtttacacactggcattctgcagtgtccataaagtttgtttgctttttcatgtgtagagata |
45209685 |
T |
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| Q |
107 |
ttgacagtagctgagttctatagatatactattgatgtttgatttatgcaacaggtatagtaaatgtggttggcaaacttgtgatgaaaaacgttccaca |
206 |
Q |
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| T |
45209684 |
ttgacagtagctgagttctatagatatactattgatgtttgatttatgcaacaggtatagtaaatgtggttggcaaacttgtgatgaaaaacgttccaca |
45209585 |
T |
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| Q |
207 |
ggtatgtcaaaatcattatgacctactatttataaatgtgaggggtcgtgtcaaataaatattggttgttataaacatttattaactaaacatagattat |
306 |
Q |
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| T |
45209584 |
ggtatgtcaaaatcattatgacctactatttataaatgtgaggggtcatgtcaaataaatattggttgttataaacatttattaactaaacatagattat |
45209485 |
T |
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| Q |
307 |
aactttataagctctctgct |
326 |
Q |
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| T |
45209484 |
aactttataagctttctgct |
45209465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 45245984 - 45245690
Alignment:
| Q |
8 |
tgatgattttgaattgggtggtttttctggtttgtttgtttacacactggcattctgca-------------gtgtccataaaatttgtttgctttttca |
94 |
Q |
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| T |
45245984 |
tgattattttgaattgggtggtttttctggtttgtttgtttgcacactagcactctacaacattagcgcttagtgtccataaaatgtgtttgttttctaa |
45245885 |
T |
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| Q |
95 |
tgtgtagagatattgacagtagctgagttctatagatata-ctattgatgtttgatttatgcaacaggtatagtaaatgtggttggcaaacttgtgatga |
193 |
Q |
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| T |
45245884 |
tatctaca--taatgacagtagctgagttttatagatattgctacttatgtttgatttatgcaacaggtataatacaggtgattgggaaacttgtgatga |
45245787 |
T |
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| Q |
194 |
aaaacgttccacaggtatgtcaaaatcattatgacctactatttataaatgtgaggggtcgtgtcaaataaatattggttgttataaacatttattaa |
291 |
Q |
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| T |
45245786 |
aaaatgttcagcaggtatgtcataatcagtatgacctatgatttataaatgtga-gggtcgtgtcaaataaatattggttgttataaacgtttattaa |
45245690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 45229953 - 45229770
Alignment:
| Q |
108 |
tgacagtagctgagttctatagatat-actattgatgtttgatttatgcaacaggtatagtaaatgtggttggcaaacttgtgatgaaaaacgttccaca |
206 |
Q |
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|||||||| || |||| ||| ||||| |||| | ||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||| |||| || |
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| T |
45229953 |
tgacagtatctcagttttatggatattactacttatgtttgatttatgcaacaggtataataaaggtgattgggaaacttgtgatgaaaaatgttcagca |
45229854 |
T |
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| Q |
207 |
ggtatgtcaaaatcattatgacctactatttataaatgtgaggggtcgtgtcaaataaatattggttgttataaacatttattaa |
291 |
Q |
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| T |
45229853 |
ggtatttcataatcagtatgacctatgatttataaatgcga-ggatcaattcaaataaatattggttgctataaacatttattaa |
45229770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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