View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10500_low_23 (Length: 330)

Name: NF10500_low_23
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10500_low_23
NF10500_low_23
[»] chr4 (6 HSPs)
chr4 (19-304)||(23423486-23423771)
chr4 (19-320)||(24297957-24298258)
chr4 (19-319)||(23447986-23448286)
chr4 (19-311)||(23875175-23875467)
chr4 (23-319)||(26827719-26828015)
chr4 (33-196)||(23446646-23446809)
[»] chr8 (1 HSPs)
chr8 (23-292)||(35961528-35961797)
[»] chr1 (1 HSPs)
chr1 (39-189)||(12165045-12165197)
[»] chr2 (4 HSPs)
chr2 (132-320)||(41244594-41244782)
chr2 (132-286)||(41257557-41257711)
chr2 (26-130)||(41257791-41257895)
chr2 (27-130)||(41244400-41244503)
[»] chr7 (1 HSPs)
chr7 (68-250)||(44071901-44072083)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 23423486 - 23423771
Alignment:
Q  19 cattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 118  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423486 cattaagcaatttaccaagatcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 23423585  T
Q  119 caactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtat 218  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23423586 caactcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtat 23423685  T
Q  219 ctaccgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctccttccttccttcc 304  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23423686 ctaccgattcttccaaccggaaattgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcctcccttccttcc 23423771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 24298258 - 24297957
Alignment:
Q  19 cattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 118  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24298258 cattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 24298159  T
Q  119 caactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24298158 caactcaagaacttcagcagcaagatattcaagaactgctgctaggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtat 24298059  T
Q  219 ctaccgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctccttccttccttccaccggctgctttct 318  Q
    |||||||||||||| || || || |||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||    
T  24298058 ctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggtcctcctcctttccttccaccggctcccttct 24297959  T
Q  319 tc 320  Q
    ||    
T  24297958 tc 24297957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 23447986 - 23448286
Alignment:
Q  19 cattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 118  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23447986 cattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 23448085  T
Q  119 caactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtat 218  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23448086 caactcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtat 23448185  T
Q  219 ctaccgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctccttccttccttccaccggctgctttct 318  Q
    |||||||||||||| || || || |||||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  23448186 ctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggttctcctcccttccttccaccggctcctttct 23448285  T
Q  319 t 319  Q
    |    
T  23448286 t 23448286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 23875467 - 23875175
Alignment:
Q  19 cattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 118  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23875467 cattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagc 23875368  T
Q  119 caactcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtat 218  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23875367 caactcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtat 23875268  T
Q  219 ctaccgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctccttccttccttccaccggct 311  Q
    |||||||||||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  23875267 ctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggacctcctcctttccttccaccggct 23875175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 26828015 - 26827719
Alignment:
Q  23 aagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaac 122  Q
    ||||| ||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||| |||||     
T  26828015 aagcagttttccaagctcttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaat 26827916  T
Q  123 tcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctac 222  Q
    |||||||| |||||||| || |||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||  |||||||||| ||| |  |    
T  26827915 tcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggc 26827816  T
Q  223 cgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctccttccttccttccaccggctgctttctt 319  Q
    |||||||||| || ||||| || || || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  26827815 cgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctt 26827719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 23446646 - 23446809
Alignment:
Q  33 ccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaactt 132  Q
    ||||| |||||||| ||| | ||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23446646 ccaagttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcacgagctgcatttccagccaactcaagaactt 23446745  T
Q  133 cagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagc 196  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||    
T  23446746 cagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc 23446809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 35961797 - 35961528
Alignment:
Q  23 aagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaac 122  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||| ||||||||     
T  35961797 aagcaatttcccaagctcttcatcattcctcacagccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaat 35961698  T
Q  123 tcaagaacttcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctac 222  Q
    |||||||||||||||||||||||||||||||| || |||| ||| || |||||||| ||||||||||| ||||| ||||  |||||||||||||| |  |    
T  35961697 tcaagaacttcagcagcaagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacggc 35961598  T
Q  223 cgattcttccaaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcc 292  Q
    |||||||||| || ||||| ||||| || |||||||| |||||||| |||||||||||||||||||||||    
T  35961597 cgattcttcccactgggaattgaagtccggctctgattgatcttgttaccgacttcttccttggtcctcc 35961528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 12165197 - 12165045
Alignment:
Q  39 tcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcag 138  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12165197 tcttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacctcagcag 12165098  T
Q  139 caagatattca--agaactgctgctaggtatactggagcacctgtgccgacac 189  Q
    | |||||||||  ||||||||||||||||||||||||||||| || |||||||    
T  12165097 cgagatattcaagagaactgctgctaggtatactggagcaccggttccgacac 12165045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 132 - 320
Target Start/End: Original strand, 41244594 - 41244782
Alignment:
Q  132 tcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttc 231  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||    
T  41244594 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttc 41244693  T
Q  232 caaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctccttccttccttccaccggctgctttcttc 320  Q
    |||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||||||  | ||||||||||| ||| ||||||||    
T  41244694 caactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttcttc 41244782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 132 - 286
Target Start/End: Complemental strand, 41257711 - 41257557
Alignment:
Q  132 tcagcagcaagatattcaagaactgctgctaggtatactggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttc 231  Q
    ||||||||||||||||||||||| || |||| ||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||    
T  41257711 tcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacgaccgattcttc 41257612  T
Q  232 caaccgggaactgaagaccagctctgatggatcttgtcaccgacttcttccttgg 286  Q
    | || || || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  41257611 cgactggaaattgaagaccagctctggtggatcttgtcactgacttcttccttgg 41257557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 41257895 - 41257791
Alignment:
Q  26 caatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactca 125  Q
    |||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| |||||||||||||||||||||||||||    
T  41257895 caattttccaagttcttcatcgttcctcacagccaacaacacgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactca 41257796  T
Q  126 agaac 130  Q
    |||||    
T  41257795 agaac 41257791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 41244400 - 41244503
Alignment:
Q  27 aatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaa 126  Q
    ||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||    
T  41244400 aattttcctagctcttcatcattcctcactgccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaa 41244499  T
Q  127 gaac 130  Q
    ||||    
T  41244500 gaac 41244503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 250
Target Start/End: Original strand, 44071901 - 44072083
Alignment:
Q  68 atgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctaggtat 167  Q
    |||||||||||  |||| |||||||||||| || |  || || || |||||||| || | ||| |||||||| ||||| ||||| || || |  |||||     
T  44071901 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 44072000  T
Q  168 actggagcacctgtgccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccgggaactgaagacc 250  Q
    || |||||||| | ||||||||| | ||||||| ||||   ||| | | ||||  ||||||||||||| ||||| ||||||||    
T  44072001 accggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgattcttccaacggggaattgaagacc 44072083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University