View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_24 (Length: 329)
Name: NF10500_low_24
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 43482371 - 43482669
Alignment:
| Q |
19 |
gaaagaccctatttaaaccaacctttactaacaggtgggggtgggggatggatgacttggacatttggtttactgaagataatcgccgataccaacccaa |
118 |
Q |
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| T |
43482371 |
gaaaggccctatttaaaccaacctttactaacaggtgggggtggggggtggatgacttggacatttggtttactgaagataatcgccgataccaacccaa |
43482470 |
T |
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| Q |
119 |
cccaagccacaacagcagaaccataatatattgcttcatccttccgcattatttttccgacagatttatgcatcatatttctccattgagagaattccaa |
218 |
Q |
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| T |
43482471 |
cccaagccacaacagcagaaccataatatattgcttcatccttccgcattattttgcctacagatttatgcatcatatttctccattgagagaattccaa |
43482570 |
T |
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| Q |
219 |
tggcaagattccattcccacgcacaaaaattctccagaatttgaatcgttgtctcatcaagtcatttaaatcattgtcatcgacaatattcaccatctc |
317 |
Q |
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| T |
43482571 |
tggcaagattccattcccacgcacaaaaattctccagaatttgaatcgttgtctcatcaagtcattcaaatcattgtcatcgacaatattcaccatctc |
43482669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 33 - 317
Target Start/End: Original strand, 43475160 - 43475456
Alignment:
| Q |
33 |
aaaccaacctttactaac------aggtgggggtgggggatggatgacttggacatttggtttactgaagataatcgccgataccaacccaacccaagcc |
126 |
Q |
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| T |
43475160 |
aaaccaacctttactaacggatggaggcgggggtggaggttggacgacttggacatttggtttagcgaaaataatcgctgataacaacccaacccaagcc |
43475259 |
T |
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| Q |
127 |
acaacagcagaaccataatatattgcttcatccttccgcattatttttccgacagatttatgcatcatatttctccattgagagaattccaatggcaaga |
226 |
Q |
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| T |
43475260 |
acaaaagcagaaccataatatattgcttcttccttctgcattagtttgcagacagatttatggatcatatttctccattgagagaatttcaatggcaaga |
43475359 |
T |
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| Q |
227 |
ttccattccca------cgcacaaaaattctccagaatttgaatcgttgtctcatcaagtcatttaaatcattgtcatcgacaatattcaccatctc |
317 |
Q |
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| T |
43475360 |
ttccattctcattctcgcgaacataaattctccagaatttgtatcgttggttcatcaggtcattcaaatcattatcatccacaagattcaccatctc |
43475456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 313
Target Start/End: Original strand, 43465340 - 43465529
Alignment:
| Q |
124 |
gccacaacagcagaaccataatatattgcttcatccttccgcattatttttccgacagatttatgcatcatatttctccattgagagaattccaatggca |
223 |
Q |
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| T |
43465340 |
gccacaaaagtagaaccataatataatacttcttcctttccaattattttccagagagatttaccgatcatttttctccattgagagaattctaatagaa |
43465439 |
T |
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| Q |
224 |
agattccattcccacgcacaaaaattctccagaatttgaatcgttgtctcatcaagtcatttaaatcattgtcatcgacaatattcacca |
313 |
Q |
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| T |
43465440 |
agaattcattgccatgtacttcaattctcaaggattttaactgctgcctcatcacgtcatgcaaatcattatcatccacaagattcacca |
43465529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 43467781 - 43467899
Alignment:
| Q |
194 |
tatttctccattgagagaattccaatggcaagattccattcccacgcacaaaaattctccagaatttgaatcgttgtctcatcaagtcatttaaatcatt |
293 |
Q |
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|||||||||||||||| |||| || ||| || | |||| ||||| | ||| |||||| || |||| ||| ||||| |||||| |||||| |||||||| |
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| T |
43467781 |
tatttctccattgagataatttcagtggaaacaatccactcccatgtacatcgattctcaaggatttcaattgttgtttcatcatgtcattcaaatcatt |
43467880 |
T |
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| Q |
294 |
gtcatcgacaatattcacc |
312 |
Q |
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| T |
43467881 |
atcatccacaagattcacc |
43467899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 1072935 - 1072891
Alignment:
| Q |
206 |
gagagaattccaatggcaagattccattcccacgcacaaaaattc |
250 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
1072935 |
gagagaattccaatggcaagattccattcccacacacataaattc |
1072891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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