View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_25 (Length: 328)
Name: NF10500_low_25
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 49511037 - 49510744
Alignment:
| Q |
18 |
tttctagatggttctgttccgtatattccattggatggagcagaacggtatgtgccgggaaaatgttgggaagatacttgcaatgcaattaatgatgcta |
117 |
Q |
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| T |
49511037 |
tttctagatggttctgttccgtatattccattggatggagcagaacggtatgtgccgggaaaatgttgggaagatacttgcaatgcaattaatgatgcta |
49510938 |
T |
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| Q |
118 |
agcattttatttgcataactggttggtctgtttacacggaaataaccttgattagagatccaaacgagtcaacaagagcaaccatcactcttggggagct |
217 |
Q |
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| T |
49510937 |
agcattttatttgcataactggttggtctgtttacacggaaataaccttgattagagatccaaacgagtcaacaagagcaaccatcactcttggggagct |
49510838 |
T |
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| Q |
218 |
tcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacagaacttctgttcctgactttaagaaagatggcttgatg |
311 |
Q |
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| T |
49510837 |
tcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacagaacttctgttcctgactttaagaaagatggcttgatg |
49510744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 311
Target Start/End: Complemental strand, 49521933 - 49521688
Alignment:
| Q |
66 |
tatgtgccgggaaaatgttgggaagatacttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataacct |
165 |
Q |
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| T |
49521933 |
tatgtacctggaagatgttgggaagatatttacaatgccattatgaatgctaaagtctttatttacataactggttggtctgttcatacagaaataacct |
49521834 |
T |
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| Q |
166 |
tgattagagatccaaacgagtcaacaagagcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttg |
265 |
Q |
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| T |
49521833 |
tgattagggacccaaacaagacaacagaaagtagtatcaccctaggagaaatgctcaagaaaaaagccaacgaaggtgttaatgttcttgtgcttgtttg |
49521734 |
T |
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| Q |
266 |
ggatgacagaacttctgttcctgactttaagaaagatggcttgatg |
311 |
Q |
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| T |
49521733 |
ggatgacagaacctctgttccggcttttaagaaagacggtttgatg |
49521688 |
T |
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