View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_26 (Length: 321)
Name: NF10500_low_26
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 9502576 - 9502260
Alignment:
| Q |
1 |
atttccttcctacagcctatggttgacaccgaaccatacgatagaggtcgctgttgttgttgataatgcttcacctgcaaataataaacaatgaaataat |
100 |
Q |
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| T |
9502576 |
atttccttcctacagcctatggttgacaccgaaccatacgatagaggtcgctgttgttgttgataatgcttcacctgcaaataataaacaatgaaataat |
9502477 |
T |
|
| Q |
101 |
atgagacgcactgtcctcaacgattttccttgtataataagctaacaacaaca---gtgtacctctccgttttgcttggacagctgatcatcttcctccg |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9502476 |
atgagacgcactgtcctcaaggattttccgtgtataataagctaacaacaacaacagtgtacctctccgttttgcttggacagctgatcatcttcctcag |
9502377 |
T |
|
| Q |
198 |
atgatgacgaagttgctaacgacaacgatatctcaaccgattcatgaatctctcgtcgcgcattctccgttttcagatcaccgtcatcggagccatttcc |
297 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9502376 |
atgatgatgaagttgctaacgacaacgatatctcaacagattcatgaatctctcgtcgcgcattctccgttttcagatcaccgtcatcggagccatttcc |
9502277 |
T |
|
| Q |
298 |
gacgtggatctctgctt |
314 |
Q |
| |
|
||||||||||| ||||| |
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| T |
9502276 |
gacgtggatctttgctt |
9502260 |
T |
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