View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_28 (Length: 307)
Name: NF10500_low_28
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 35161005 - 35161300
Alignment:
| Q |
1 |
tcattcttgatatctagcatttttcaattttatatgtaaacttttgattgcttctatggtacattaaataatcctctaaacttttgatgtatatatgaaa |
100 |
Q |
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| T |
35161005 |
tcattcttgatatctagcattttccaattttatatgtaaacttttgattgcttctatggtacattaaataatcctctaaacttttgatgtatatatgaaa |
35161104 |
T |
|
| Q |
101 |
taaaacaataaatgcacattttcaatataagtttatcaatgtaccgtaagcttagaacaatgcatgatatatggaaggttcggagttcgaatcttaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||| |||| || ||| ||| ||||||| |||||||| ||||||||||||||||| |
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| T |
35161105 |
taaaacaataaatgcacattttcaatataagtttgtcaatgtcccgtaaacttaaaaaaatacataatatatgcaaggttcgaagttcgaatcttaacca |
35161204 |
T |
|
| Q |
201 |
tcata---gnnnnnnnnnnnnnnngtttgccaatgttaactttagagatagagatagagaataaagc-aaaaaagaatttacctgaaggctaaaac |
292 |
Q |
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| T |
35161205 |
tcataaagaaaagaaaaaaaaaaagtttggcaatgttaactttagagatagagatagagaataaagcaaaaaaagaatttacctgaaggctaaaac |
35161300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 38489242 - 38489202
Alignment:
| Q |
154 |
agaacaatgcatgatatatggaaggttcggagttcgaatct |
194 |
Q |
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| T |
38489242 |
agaacaatgcatgatatatgcaaggttcggggttcgaatct |
38489202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 292540 - 292588
Alignment:
| Q |
82 |
ttttgatgtatatatgaaataaaacaataaatgcacattttcaatataag |
131 |
Q |
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| T |
292540 |
ttttgatgtgtatatgaaataaaacattaaatgcacctttt-aatataag |
292588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 51436645 - 51436609
Alignment:
| Q |
155 |
gaacaatgcatgatatatggaaggttcggagttcgaa |
191 |
Q |
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| T |
51436645 |
gaacaatgcataatatatgcaaggttcggagttcgaa |
51436609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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