View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_29 (Length: 307)
Name: NF10500_low_29
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 20003223 - 20003496
Alignment:
| Q |
19 |
cccttatagttgtgtttctcttcactagtgcagatattctgtatcgacatgcaaaagataaagaaaaaacaaacacaggcactttttattagaaagaata |
118 |
Q |
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| T |
20003223 |
cccttatagttgtgtttctcttcacttgtgcagatattctgtatcaacatgcaaaagataaaaaaaaaaaaaa-acaggcactttttattagaaagaata |
20003321 |
T |
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| Q |
119 |
tgcatattcgcactcgattgcaataatactatacgtttcatgttatgtggtcaaattgcataaagttgaagatacctggtatatgggacatgtcctctca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20003322 |
tgcatattcgcactcgattgcaataatactatacgtttcatgttatgtggtcaaattgcataaagttgaagatacctggtatatgggacatgtcctctca |
20003421 |
T |
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| Q |
219 |
taattatgcacatgaccatagatggcaatgtccaccttgtatttctgccacagcttttgaaggctctctctcccc |
293 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20003422 |
taattatgcacatgaccgtagatggcaatgtccaccttgtatttctgccacagcttttgaaggctctctctcccc |
20003496 |
T |
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