View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10500_low_30 (Length: 305)
Name: NF10500_low_30
Description: NF10500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10500_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 36067219 - 36067022
Alignment:
| Q |
17 |
tcaacatagtgccccaatgatat----gaacctttaagggacactttaaacccaactttcaagagttgaaaattagttttaagaatatataatgagattt |
112 |
Q |
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| T |
36067219 |
tcaacatagtgccccaatgatatatatgaacctttaagggacactttaaacccaactttcaagagttgaaaattagttttaagaatatataatgagattt |
36067120 |
T |
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| Q |
113 |
gggtgcatggcatgatgcccatttgctttgttttatttgatttaaattgtcataaaatgtgtggtcaagactttgtatgaattatgccaaacacttaa |
210 |
Q |
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| T |
36067119 |
gggtgcatggcatgatgcccatttgctttgttttacttgatttaaattgtcataaaatgtgtggtcaagactttgtatgaattatgccaaacacttaa |
36067022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 36066984 - 36066934
Alignment:
| Q |
248 |
gagcatgagagactcattacatatgtgcttcccaacccaagttcccctttg |
298 |
Q |
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| T |
36066984 |
gagcatgagagactcattacatatgtgcttcccaacccaagttcccctttg |
36066934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 31685599 - 31685485
Alignment:
| Q |
62 |
acccaactttcaagagttgaaaattagttttaagaatatataatgagatttgggtgcatggcatgatgcccatttgctttgttttatttgatttaaattg |
161 |
Q |
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| T |
31685599 |
acccaatttttaagagttgaaaatttgtttcaagaataaagaacaaggcttgcgcgcatgacatgctgctaatttgcattgttttatttgatttaagttg |
31685500 |
T |
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| Q |
162 |
tcataaaatgtgtgg |
176 |
Q |
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| T |
31685499 |
taataaaatgtgtgg |
31685485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 48474551 - 48474599
Alignment:
| Q |
128 |
tgcccatttgctttgttttatttgatttaaattgtcataaaatgtgtgg |
176 |
Q |
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| T |
48474551 |
tgcccatttgctttgtttaatttgatttaagttgtaataaaatgtgtgg |
48474599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 29024553 - 29024496
Alignment:
| Q |
17 |
tcaacatagtgccccaatgatatgaacctttaagggacactttaaacccaactttcaaga |
76 |
Q |
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| T |
29024553 |
tcaacatagtggctcaatcatatgaacctttaaggaacacttt--atccaactttcaaga |
29024496 |
T |
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